PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl003142
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 415aa    MW: 46015.3 Da    PI: 8.6606
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333591PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-9638PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.3e-143885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+e d++lv ++++ G g+W++ ++  g+ R++k+c++rw +yl
        Pgl003142 38 RGPWTPEGDKILVSYIQKKGHGSWRALPKLAGLLRCGKSCRLRWTNYL 85
                     89******************************99************97 PP
2Myb_DNA-binding54.52.6e-1791136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+  ++++++ lG++ W++Ia+ ++ gRt++++k++w+++l
        Pgl003142  91 RGSFTQEEERTIIQLHAILGNR-WSAIAAQLP-GRTDNEIKNFWNTHL 136
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-212988IPR009057Homeodomain-like
PROSITE profilePS5129412.9483385IPR017930Myb domain
SuperFamilySSF466891.39E-2735132IPR009057Homeodomain-like
SMARTSM007171.1E-93787IPR001005SANT/Myb domain
PfamPF002492.5E-133885IPR001005SANT/Myb domain
CDDcd001674.49E-84085No hitNo description
PROSITE profilePS5129425.91186140IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2789140IPR009057Homeodomain-like
SMARTSM007171.9E-1790138IPR001005SANT/Myb domain
PfamPF002493.7E-1691136IPR001005SANT/Myb domain
CDDcd001671.80E-1293136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
XRHSGENFSK SSAALGISSS QKCNMGRAPC CEKTGIKRGP WTPEGDKILV SYIQKKGHGS  60
WRALPKLAGL LRCGKSCRLR WTNYLRSDIK RGSFTQEEER TIIQLHAILG NRWSAIAAQL  120
PGRTDNEIKN FWNTHLKKRL LKMGLDPSTH APKSEASSSA AQGYGALALT RHKVQWENAR  180
LEAEARLSRE SLLMFSNTAN GYPLITMPSN KPPTDYFLKI WNSEAGKAFR KESSSRMINK  240
SRENSCHVFD KNDPNGRGYD EVLSSEIPKT PRLSASVSSS SCASTQNSCD ESLSPNDKNK  300
FNGSQQCNSA SADWIGDCIV KSPEILSCFA DVTVGQTGHK TPGDFFRFEK SGPPHVHFTG  360
FLELPLDNDN NNIGCMISEL TTSFQQQSAS PWPELHLEDD NDYWNNASFI ASAHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26381407108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.222500.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523735.13e-97PREDICTED: transcription repressor MYB6
SwissprotQ9M2D92e-94MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM71e-124A0A222UAM7_GINBI; R2R3MYB15
STRINGXP_010523735.11e-96(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-96myb domain protein 17