PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl002837
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 438aa    MW: 47414.6 Da    PI: 6.1972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337810PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-38152PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-10142167127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC+ f++ GtC+y ++C+FaHg+
  Pgl002837 142 FKTKLCCKFRA-GTCPYSSNCNFAHGM 167
                69*********.*************95 PP
2zf-CCCH20.68e-07217241226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                kt+ C+ f+    C+yGdrC+F H+
  Pgl002837 217 KTRHCKKFYTDEGCPYGDRCNFVHD 241
                8999********************7 PP
3zf-CCCH437.6e-14283308126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++Gd+C+FaHg
  Pgl002837 283 WKTRICNKWETTGHCPFGDKCHFAHG 308
                8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-8139172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155141168IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-14141174IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-9214242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272215243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7215242IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4217241IPR000571Zinc finger, CCCH-type
SMARTSM003561.1217242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-17278313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-10279313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145282310IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-9282309IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-11283308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEYEVDTSGA AELGMGMGGG AVEGDMYWVA GGNEQEMWAT EEDYDQASSQ GYRQSDGGWS  60
GGDYRAGGLE GGQSRSGSEP PHKKSKNGHG DLQGNGSRGR SGYQGELVQG TSSGTPPPSN  120
GTVNEVTSSG GGKSKGTGRI FFKTKLCCKF RAGTCPYSSN CNFAHGMEEL RKPPPNWQEI  180
VAAQEEDRAQ RAERRGENQI PCVSSSGAGN DSQRFHKTRH CKKFYTDEGC PYGDRCNFVH  240
DDQSRSREYV AISLAPTPSP VSGNGAGNGN NGGNGSFQRP SNWKTRICNK WETTGHCPFG  300
DKCHFAHGLA ELQKYGGGLL DGENGEMSVG LRNDLKQSGT LPKAHVDAGA GPSSSVYNTD  360
NYVIGPSNQR SMGNFISQRQ GQRILPKWKG PDKISRIYGD WIEDNEWEFT SRSTASQIEK  420
VSQAEEEILN EVEIKEGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.255530.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020519258.11e-124zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-100C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D6R3G61e-137A0A0D6R3G6_ARACU; Uncharacterized protein
STRINGERN002601e-124(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-79C3H family protein