PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl002227

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 499aa MW: 53069.6 Da PI: 7.5974

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334990	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-41707	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.5	2.9e-39	138	260	3	128
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskks 100 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ + + s +ss+s + ++ ++ + Pgl002227 138 AKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANIAsLNISTRSSSS------SISAPLkPPYFH 231 799****************************************************************977742222222222......222222233333 PP TCP 101 qksaasalnlakesrakararare.rtre 128 + s + + n+a+ ++ r+r++ r +e Pgl002227 232 SGSLNLNANFAARLDQQIRSRNEWeRAQE 260 33333333333333344444433222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-40	142	325	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.636	143	197	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MSRIWASVGN LEELGSSSME SHVDNGRTKF NLETGMQPLQ LLSYDQEEQR MVGYNVQTAS 60 NRQNQDDHGR SSLGSGYLAQ AALASSQVDS SLAMSAAKLY SNTETAIVIP KAHEQKTTSA 120 AAAAAVQGTE DASKKPLAKR SSTKDRHTKV DGRGRRIRMP ATCAARVFQL TRELGHKSDG 180 ETIEWLLQQA EPAVIAATGT GTIPANIASL NISTRSSSSS ISAPLKPPYF HSGSLNLNAN 240 FAARLDQQIR SRNEWERAQE ERSGMNTGLG IGHHHTDSSG LTQALIHEQN LINDRAEIND 300 LMNSECGNSR KRLREEQQQQ QFKNMQPMWA VTPATGLSSA GQNMPGTFWM LPPTPGVMGH 360 AGPGSDPIWT FPASSGGAMY RTSMSSGLHF MPRPINLNSS STSMGHVQFG SMLMQGPAGS 420 GSGSGAGAGS GSASQQLPQT GLGLGGGGGS NETHLGMLAA LNAAYNNRSM NNNSEHHQSM 480 GSAGHNHADS GEDRRDNSQ

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MSRIWASVGN LEELGSSSME SHVDNGRTKF NLETGMQPLQ LLSYDQEEQR MVGYNVQTAS  60
NRQNQDDHGR SSLGSGYLAQ AALASSQVDS SLAMSAAKLY SNTETAIVIP KAHEQKTTSA  120
AAAAAVQGTE DASKKPLAKR SSTKDRHTKV DGRGRRIRMP ATCAARVFQL TRELGHKSDG  180
ETIEWLLQQA EPAVIAATGT GTIPANIASL NISTRSSSSS ISAPLKPPYF HSGSLNLNAN  240
FAARLDQQIR SRNEWERAQE ERSGMNTGLG IGHHHTDSSG LTQALIHEQN LINDRAEIND  300
LMNSECGNSR KRLREEQQQQ QFKNMQPMWA VTPATGLSSA GQNMPGTFWM LPPTPGVMGH  360
AGPGSDPIWT FPASSGGAMY RTSMSSGLHF MPRPINLNSS STSMGHVQFG SMLMQGPAGS  420
GSGSGAGAGS GSASQQLPQT GLGLGGGGGS NETHLGMLAA LNAAYNNRSM NNNSEHHQSM  480
GSAGHNHADS GEDRRDNSQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.9674	0.0	root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S2X3	1e-122	A0A0C9S2X3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_16820_1789 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-41	TCP family protein