PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pgl001105 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||||||
Protein Properties | Length: 212aa MW: 24096 Da PI: 9.8717 | ||||||||||||||||
Description | MIKC_MADS family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.4 | 4.5e-29 | 4 | 54 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n s+rqvtfskR+ng+lKKA+ELSvLCdaeva+iifs+tgk+ e++s Pgl001105 4 KRIQNPSRRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSETGKISEFAS 54 79***********************************************86 PP | |||||||
2 | K-box | 58.2 | 3.5e-20 | 82 | 169 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + + l+ L ++++ L+++ ++++GedLesL++keLq+Le+qL++++k+i ++K++++ ++ + l +k + l+ee+ +L++kl Pgl001105 82 QNIKFGELRLKTLHEKMDVLKKKEKNMVGEDLESLTMKELQRLEKQLQTGIKRISDRKMRIFAQSSKLLIQKVRILEEEKIELQTKLS 169 555666677899************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.922 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-30 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-28 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.42E-31 | 2 | 67 | No hit | No description |
Pfam | PF00319 | 4.8E-25 | 5 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 18 | 33 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 33 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.955 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-15 | 91 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEMKRIQNPS RRQVTFSKRK NGLLKKAFEL SVLCDAEVAL IIFSETGKIS EFASHDESVA 60 TILEKYRIYT ETNGNLGSTS LQNIKFGELR LKTLHEKMDV LKKKEKNMVG EDLESLTMKE 120 LQRLEKQLQT GIKRISDRKM RIFAQSSKLL IQKVRILEEE KIELQTKLSA RGDSSTSATN 180 LDLGVIPTDF LIVQWLAVPV TGTEMAIDSP IH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 71 | 6 | 74 | MEF2C |
5f28_B | 2e-17 | 1 | 71 | 6 | 74 | MEF2C |
5f28_C | 2e-17 | 1 | 71 | 6 | 74 | MEF2C |
5f28_D | 2e-17 | 1 | 71 | 6 | 74 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.16334 | 0.0 | needle |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMI6 | 1e-124 | A9NMI6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 3e-37 | AGAMOUS-like 8 |