PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl000665 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 388aa MW: 43721.7 Da PI: 4.5203 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 144 | 197 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk lgL+ rqV vWFqNrRa++k Pgl000665 144 KKRRLTADQVQFLERSFEIENKLEPERKIQLAKDLGLQPRQVAVWFQNRRARWK 197 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 3.9e-42 | 143 | 234 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE+sFe e+kLeperK +la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y++l+ + ++L ke+++Lr+e++ Pgl000665 143 EKKRRLTADQVQFLERSFEIENKLEPERKIQLAKDLGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRYENLRVDYDSLLKEKDKLRAEVT 234 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-20 | 132 | 201 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 139 | 199 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-19 | 142 | 203 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.9E-17 | 144 | 197 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.13E-19 | 144 | 200 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 145 | 206 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.1E-5 | 170 | 179 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 174 | 197 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-5 | 179 | 195 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-16 | 199 | 240 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGIVVPAVWD LACELSGEAA SFATKFPYRS ATTGSANVSE VGICLAFNVT GGHRLKEYCF 60 EEMMMSGGRM YGGPNVLVMG NENISRSADA LEALLSSPVF NGSRSVANLE EVIGNVSKRP 120 FYNSFDQEET GDEDLDDCIH PPEKKRRLTA DQVQFLERSF EIENKLEPER KIQLAKDLGL 180 QPRQVAVWFQ NRRARWKTKQ LERDYDILKS RYENLRVDYD SLLKEKDKLR AEVTFLTGKL 240 HSKDCDLEAQ TKDSEYVDKK VFPQPASQCV EKFERGTSIK DTPPSCKHED LLSSGTDSSG 300 VLDEDSPHHV DCGHSSLDHV NSHLFEADQS DLSHADEEEE EEGMSEKLLP QTYTYHLLKV 360 EDGPYPDASI ASYNEMFAME DQVPLGPW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 191 | 199 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5244 | 0.0 | needle| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010242341.1 | 1e-90 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 4e-53 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | D5AB83 | 0.0 | D5AB83_PICSI; Uncharacterized protein | ||||
STRING | XP_010242341.1 | 5e-90 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-55 | homeobox 1 |
Publications ? help Back to Top | |||
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