PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl000642
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 400aa    MW: 44749.1 Da    PI: 10.2153
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55336581PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-26976PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-13131220299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +k +++s+v+   +l lp +f++ h+ k  ++  ++lede+g+  +  +    +  ++ l++GW++F  +++L++gD +vF+l++ ++f  +v ++r+
  Pgl000642 131 LKSMLHSHVSGGFWLGLPSHFCSIHMPK--RDEWMILEDENGEDSRTLF--LSG--KTGLSAGWRGFSIEHQLEDGDCLVFQLVQPTRF--KVYIVRA 220
                68999*****************777633..5668********9988888..333..345************************997777..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-17123221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-20123222IPR015300DNA-binding pseudobarrel domain
CDDcd100175.38E-21128219No hitNo description
SMARTSM010199.5E-17130221IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912130221IPR003340B3 DNA binding domain
PfamPF023622.6E-11131220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGPKNAYEEV RKQRLEENKK RMEELNLVAL SNSFSETRNS ANKSTPQRNV KPRTPKLERG  60
APVSVRRSSR VANIPPPDYR EAPIDIPHLR KSYGRRSLFS VRCANHEERQ EAIESAAKIE  120
SELGSTHPTI LKSMLHSHVS GGFWLGLPSH FCSIHMPKRD EWMILEDENG EDSRTLFLSG  180
KTGLSAGWRG FSIEHQLEDG DCLVFQLVQP TRFKVYIVRA SGFESAVTSE EQPNNTEDLQ  240
NEADNPAEER SNNTDDLQNE ADNSDRELQE HEASNLGKRK RPLKAGKKAS KTTVETGNGK  300
LSKKSGNVKT TVNEKETSSD AKDGKKVLKK SGKFKDENEK HKSKTKGQSN KLNKKTDAGA  360
NAESGNNKKL TNMLQTRKTT RIQNRIKTSG APSPMVMVQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.70400.0stem| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ69V363e-64Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]