PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pgl000542 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||||||||||
Protein Properties | Length: 453aa MW: 50931.1 Da PI: 6.9041 | ||||||||||||||||
Description | NAC family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180 | 6.3e-56 | 17 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+++yL +kv +++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++++ +++l Pgl000542 17 LPPGFRFHPTDEELITHYLVRKVVDSTFTG-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFNArSSSL 115 79*************************999.89***************99999****************************************9867778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgek++Wvmheyrle Pgl000542 116 VGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 145 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-64 | 13 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.889 | 17 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 18 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MEGLNFTYAQ DKGDTQLPPG FRFHPTDEEL ITHYLVRKVV DSTFTGRAIA EVDLNKCEPW 60 DLPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFNA RSSSLVGMKK 120 TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY NQLPKTSKDE WVVCRIFQKS IGAKKSSSDS 180 TEAHIFDVGS PSLPPLSAVN DESGSLESEG SAREHVSCFS NPQYNNNNNN SGFRTPSHHP 240 QQQRTSADSA ELSEIASIMR STAPFIHNMA LNDPRLSMNS ISRPSPFPPF LNLRQENNHV 300 QQPPLLFSQL AAFPPNSIPT NVSFPMENQA QLHSLLPGLP QNALLRALFD QYNDPGTLKH 360 CKLEPSFGPQ LDKSGKVEQA SQWVETQPRP EINMENNGLP QQMQPQPALS LPQADTCLGI 420 EMNSEMVCNR LNRSFQVGPS STSPVDLDGF WGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 17 | 175 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.10050 | 0.0 | root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292765.1 | 1e-109 | uncharacterized protein LOC18434770 | ||||
Refseq | XP_020523105.1 | 1e-109 | uncharacterized protein LOC18434770 isoform X1 | ||||
Refseq | XP_020523106.1 | 1e-109 | uncharacterized protein LOC18434770 isoform X1 | ||||
TrEMBL | G8CPZ0 | 0.0 | G8CPZ0_PICAB; Cup-shaped cotyledon | ||||
STRING | ERN06571 | 1e-108 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 4e-97 | NAC family protein |