PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG034138.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 256aa    MW: 28727.2 Da    PI: 7.9869
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG034138.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.8e-20177211135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ kTp+WR gpdg+ktLCnaCG++y++ +l
  CCG034138.1 177 CQHCGVEKTPQWRAGPDGPKTLCNACGVRYKSGRL 211
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.9E-18171221IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.585171207IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15173234No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15175209IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.58E-14176224No hitNo description
PfamPF003202.8E-18177211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MESLDTAACF MDDLLDFCSD IGEEEDGEEH QRNSKKSRRA LPSLNPNDLH PASFNVLEHS  60
LLPEFAEEDL EWLSNKDAFP TVETCFGSLS GEPGSIPKHH SPVSVLENST TSSTSNSGNS  120
SNSNIIMSSC RLRVPVKARS KRHHRHPREI QEQECWWSQE NFTRKPAESV AKLGRKCQHC  180
GVEKTPQWRA GPDGPKTLCN ACGVRYKSGR LVPEYRPANS PTFSSKLHSN SHRKVVEMRR  240
QKQMMGLLVA KPMDKG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494820.0AC149482.1 Populus trichocarpa clone Pop1-69G3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002163.10.0PREDICTED: GATA transcription factor 1-like
RefseqXP_011012220.10.0PREDICTED: GATA transcription factor 1-like
SwissprotQ8LAU91e-55GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A2K2BSR51e-160A0A2K2BSR5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14130.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-55GATA transcription factor 1