PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG034089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 944aa MW: 103506 Da PI: 5.2681 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.6 | 1.3e-24 | 147 | 248 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++Lk+gD+v+F ++++ + CCG034089.1 147 FCKTLTASDTSTHGGFSVPRRAAEKLfpsldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFI--RDEKSQ 240 99*********************999*****954444.4.38************************************************..457777 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+v+r+ CCG034089.1 241 LMVGVRRA 248 8*****97 PP | |||||||
2 | Auxin_resp | 111 | 1.2e-36 | 273 | 356 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+++YnPra++s+Fv+++ k++ka+ ++vsvGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+ CCG034089.1 273 AAHATANRSPFTIFYNPRACPSDFVIPLIKFRKAVFgTQVSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356 79********************************988*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-46 | 134 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-41 | 140 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.41E-23 | 146 | 247 | No hit | No description |
Pfam | PF02362 | 2.1E-22 | 147 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-25 | 147 | 249 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 147 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-31 | 273 | 356 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.5E-9 | 822 | 916 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.365 | 829 | 913 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.85E-8 | 845 | 908 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 944 aa Download sequence Send to blast |
MGSVEEKIKT GGLVNGAQTN LLEEMKLLKE FQDQSGIRKA INSELWYACA GPLVSLPQVG 60 SLVYYFPQGH SEQVAVSTRR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL 120 QPVNTEKDVF PIPDFGLRPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPSLDYTM 180 QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLKAGDS VLFIRDEKSQ 240 LMVGVRRANR QQTTLPSSVL SADSMHIGVL AAAAHATANR SPFTIFYNPR ACPSDFVIPL 300 IKFRKAVFGT QVSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD 360 EPGCSDKQNR VSSWEIETPE SLFIFPSLTS GLKRPLQSGF LGDSEWGSLV KKPLSWLPGS 420 GNANLPYASM SNICSEQLIN MLMKPHPINY PGICGAALPE VSAAKVASLD VKNMQATINQ 480 MPQLNQSGVT PVENQNYSQI CLDQSDAIIS SSSKINVAGK SFSSIEVENQ ASAGVGERKL 540 KAETEHLPDQ LSQLTSTGEC SVQKPSSCPM TQQNATNHLA IQNQNQGHSQ LQTSLWPAQA 600 FPELSLHNSQ QIHSPLADAT APNCSLPFLD ADEWISHPMS LAGMYRSGPL SMFGSQDTSV 660 VFPEAINPSL PFMNQDVWDH QMSNSRFLTQ ANQLISLTQQ EPCTLNSGAV KDLSDESNDQ 720 SGIYGSLNFD ASNGGGSVVD PSVSSAILDE FCTLKDADLQ NASDCLVGNL SSSQDVQSQI 780 TSASLADSQA FSRQDFPDNS GGTSSSNVDF DNSNMLQNSS WQQVAPRVRT YTKVQKTGSV 840 GRSIDVSGFK NYEELCSAIE CMFGLDGLLN NPKRSGWKLV YVDYENDVLL IGDDPWEEFV 900 GCVRCIRILS PSEVQQMSEE GMKLLNSANI QGTNAPITEG SHAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 381 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045124.1 | 0.0 | PREDICTED: auxin response factor 5-like | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A1L6K4C2 | 0.0 | A0A1L6K4C2_POPTO; Auxin response factor | ||||
STRING | POPTR_0005s25800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8991 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |