PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG033610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13688 Da PI: 10.7625 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49 | 1.1e-15 | 11 | 95 | 10 | 92 |
HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + +s+ l++p +++++ g ++ + desg +W++++++rkk++ vl+kGW+ Fv+ ++Lk+gD + F+l++ + +++ CCG033610.1 11 TDTSKTLSVPTNYLKSLpsfkG---GHAVEFQAIDESGFVWTFQCSIRKKGQYpkPVLSKGWRAFVRNKKLKVGDKIKFSLNQ-TAATP 95 4456679*******99997643...35678999************9999999899*************************987.44445 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.095 | 2 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.45E-15 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-17 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-18 | 4 | 95 | No hit | No description |
SMART | SM01019 | 2.6E-9 | 4 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-13 | 12 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MTTFSKILGK TDTSKTLSVP TNYLKSLPSF KGGHAVEFQA IDESGFVWTF QCSIRKKGQY 60 PKPVLSKGWR AFVRNKKLKV GDKIKFSLNQ TAATPFYRVQ AEKEVKIFGA IFGYSPIIAT 120 FP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 54 | 78 | RKKGQYPKPVLSKGWRAFVRNKKLK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012047.1 | 4e-85 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | U7DW61 | 4e-79 | U7DW61_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0219s00200.1 | 7e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G43950.1 | 5e-08 | auxin response factor 23 |