PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033575.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 594aa    MW: 65604.1 Da    PI: 5.9374
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033575.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.56.9e-25128229199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++p+ +a+++        +++ +  tlt+ d +g sW++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++ ++e
  CCG033575.1 128 FSKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVADIHGVSWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RNLKGE 221
                  88*********************999****985444444..9************************************************..568999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  ++++v+r+
  CCG033575.1 222 MFIGVRRA 229
                  *****996 PP
2Auxin_resp84.42.4e-28273357183
   Auxin_resp   1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+++a+++ +FevvY+Pra++ s+Fvv++e ve+al v +++GmR+kma+etedss+ ++ +Gtv+g+   d   W++S+Wr+L+
  CCG033575.1 273 AVERAAKGLPFEVVYYPRAGWySDFVVRAEVVEAALCVFWTAGMRVKMAVETEDSSRMTWfQGTVSGTGLPDCGAWRGSPWRMLQ 357
                  678999*************9779************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-34120231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-30123236IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-20128228No hitNo description
SMARTSM010192.8E-21128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647128230IPR003340B3 DNA binding domain
PfamPF023621.6E-22128229IPR003340B3 DNA binding domain
PfamPF065071.4E-26273357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MPPPQLTELS RVDPRFWRAC AGSSVQIPAV NSRVYYFPQG HLEQSSSSTA PHPPFLSNLA  60
LSKPSIPCQI SAVDFLADPV TDEVFTRLLL IPLDNPSSNL PLSFLEPCRS EGEGANNVDD  120
DERKILAFSK ILTPSDANNG GGFSVPRFCA DSIFPPLNYQ AEPPVQTLTV ADIHGVSWDF  180
RHIYRGTPRR HLLTTGWSKF VNNKKLIAGD SVVFMRNLKG EMFIGVRRAV RFNNSARWRE  240
QISDSGGDGK VKVEEGFSRS WRGRLSQEAV VEAVERAAKG LPFEVVYYPR AGWYSDFVVR  300
AEVVEAALCV FWTAGMRVKM AVETEDSSRM TWFQGTVSGT GLPDCGAWRG SPWRMLQITW  360
DEPEVLQNVK RVSPWQVEFV ATTLPLQDAS PPMKKLRYPN DSRFLTDGEL FFPMSDLTNS  420
TTGHMNASML NYSTFPAGMQ GARQDPFSTF SLSNLISENA SQVFGDKVFG NNLVPKMKTM  480
PSEMNIGSLQ CGDLSPESQS SAHSFGKDFT GNRSFNPKKV GISSIQLFGK IIHMNQPVEN  540
GFDGVGFMDN SNKGCNETEG VNALELSLTS SYTELLNRID VQCQSASAVE ACSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-671237851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027639.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2K2BFU50.0A0A2K2BFU5_POPTR; Auxin response factor
STRINGPOPTR_0002s09050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-180auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]