PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032111.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 669aa MW: 73804.3 Da PI: 7.9839

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032111.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	172	191	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G++C+F H CCG032111.3 172 ICDFFAK-GWCIRGSSCRFLH 191 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16131	8.5E-7	141	198	IPR032297	Torus domain
SMART	SM00356	0.0043	167	193	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.145	167	194	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	167	192	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.8E-4	172	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MGSHSTLEMS EMREDSVSNF KCSGPLDGPL TLQKEKSCVN YLDSWSPKLS KHLVIARKNG 60 TLEHAINKTD AFGHSKTHLS NSSEAVAVET TEPFVITGIE VDVVLSKRNC LGQEANVVLD 120 SKEELKPVDV KSEDSKEQTE SRLSRLVASV TRARSLSPST ELRDGNKRAA VICDFFAKGW 180 CIRGSSCRFL HKTNKADNTG QQLGLDEVAI REDQFDEGAR NILETPKFPH FPDPVAASTG 240 KEATFSSHFS SERLPPLEHK ENERLHQLDD EHKLSLRQRV GIPLNAKQFS SSKDDPSFSS 300 SFKDVGMENF RQHWPATDCG SYTSLINRGS SFSFSSSFDT SLLGSQKLLD SDRASRSSSL 360 PRSASAFSGS EPESLSLASV PGDQLRHAEH KTKISSNDWE PSIPFRPSFF ITPEMISSAR 420 SKYDPLRDSF VLPNVGDKSF KFSFFSLGAS ISNALQQPIY GDSLSNRNFG TECKGDKSTI 480 SSHDKPHRSL SDKNCSTPGK DSFTTATVTG GAGTADGENG SALKEESASG IGYEKVNRVT 540 NKNDCDARPQ IDRSRHKKDL KADSVRQNND MEVDQKIGGD LQKESKVLRH FRAALIDFVK 600 DLLKPTWREG HLSKDAHNTI VKKTVEKVLS TLQPHQIPAN VESIKQYLSS SQPKMAKLVE 660 GYISKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MGSHSTLEMS EMREDSVSNF KCSGPLDGPL TLQKEKSCVN YLDSWSPKLS KHLVIARKNG  60
TLEHAINKTD AFGHSKTHLS NSSEAVAVET TEPFVITGIE VDVVLSKRNC LGQEANVVLD  120
SKEELKPVDV KSEDSKEQTE SRLSRLVASV TRARSLSPST ELRDGNKRAA VICDFFAKGW  180
CIRGSSCRFL HKTNKADNTG QQLGLDEVAI REDQFDEGAR NILETPKFPH FPDPVAASTG  240
KEATFSSHFS SERLPPLEHK ENERLHQLDD EHKLSLRQRV GIPLNAKQFS SSKDDPSFSS  300
SFKDVGMENF RQHWPATDCG SYTSLINRGS SFSFSSSFDT SLLGSQKLLD SDRASRSSSL  360
PRSASAFSGS EPESLSLASV PGDQLRHAEH KTKISSNDWE PSIPFRPSFF ITPEMISSAR  420
SKYDPLRDSF VLPNVGDKSF KFSFFSLGAS ISNALQQPIY GDSLSNRNFG TECKGDKSTI  480
SSHDKPHRSL SDKNCSTPGK DSFTTATVTG GAGTADGENG SALKEESASG IGYEKVNRVT  540
NKNDCDARPQ IDRSRHKKDL KADSVRQNND MEVDQKIGGD LQKESKVLRH FRAALIDFVK  600
DLLKPTWREG HLSKDAHNTI VKKTVEKVLS TLQPHQIPAN VESIKQYLSS SQPKMAKLVE  660
GYISKYGKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043418.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBL	A0A2K1YG22	0.0	A0A2K1YG22_POPTR; Uncharacterized protein
STRING	POPTR_0011s05550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10805	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-38	C3H family protein