PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032104.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 395aa    MW: 42672.8 Da    PI: 7.4477
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032104.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.12.5e-41792332115
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++          
  CCG032104.1  79 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSIPshlrsgsfnp 176
                  789******************************************************************99988888888888777777776777777 PP

          TCP  89 .............................kaaksaa.kskksqksaasalnlakesr 115
                                               ++++ +a  + k++ +++s l+l+ e+ 
  CCG032104.1 177 nfslqqrsrslfpgigletpqpptflsfqSSNNLNAvLQAKQELRDNSSLELSTETE 233
                  777777777888888777777777776653333333355555555555555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-4383252IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92385139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGGDDQFHH QHHHQHHHRP TFPFQLLEKK EDEPCSSSSP YPSLPISTTE PNSNSNSTNT  60
NHSSSNLQIE VAEPSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS  120
DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSIPSHLR SGSFNPNFSL  180
QQRSRSLFPG IGLETPQPPT FLSFQSSNNL NAVLQAKQEL RDNSSLELST ETEESLSRKR  240
RSEQDLSPSQ QHQVGNYLLQ SSTGAIPASH GQIPANFWML ANSNNNQVMS GDPIWTFPSA  300
NNSSVYRGSM SSGLHFMNFP APVTLLPSQQ LGSTSIGGAS AGNSGISEGH LNMLAGLNPY  360
RPSGLSESQA SGSHSHHGGG GGGSDDRHDT TSHHS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241SRKRRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043408.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z002e-67TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A3N7FS880.0A0A3N7FS88_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.12e-51TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]