PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032101.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 421aa    MW: 47044.8 Da    PI: 6.89
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032101.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17173262390
                  EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  k l++sdv+++gr+vlpk+ +ee+   +  +e++ l+l+d  s+++W +kl++  ++ks++yvl+ ++ eFvk +gL++gD+++++  +++++
  CCG032101.1 173 KDLKNSDVGSLGRIVLPKREVEENlpPLHDKEGILLVLRDiYSNQEWGLKLKFwtNNKSRMYVLE-NTGEFVKRHGLETGDSLTLY--EDESK 262
                  7799**********************55556889******7788*******99888888889999.*******************9..44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-23167264IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.9E-17171271IPR003340B3 DNA binding domain
PROSITE profilePS508639.545171271IPR003340B3 DNA binding domain
SuperFamilySSF1019369.68E-20172264IPR015300DNA-binding pseudobarrel domain
PfamPF023628.5E-14173263IPR003340B3 DNA binding domain
CDDcd100174.03E-20175265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGCPQNSPLS SIYGPSHPSI SSSSLTHSNY FAPQYYTTPP CETTQFPSTH ALDQRSQYTP  60
APDPFYPVMV GQNAIEMQRS CILQPNALQL EQERRALDAY KTKVARCMRK LARQRRLGKA  120
SSGASSTRIM DASRLALHGA STGGQNCRTN SASKDLYEFL TPDNKKLRAL LRKDLKNSDV  180
GSLGRIVLPK REVEENLPPL HDKEGILLVL RDIYSNQEWG LKLKFWTNNK SRMYVLENTG  240
EFVKRHGLET GDSLTLYEDE SKNLMGLSPG LARVAVQGLS CSSRKQYFSI TKVQRPESAL  300
AQTPPPRSHN CNHLTEHMWQ DGDEEYTSLA LLTEQLENKE QEEANSLGAV PMDFSCSYTN  360
ELELNNNPFN NFSTYTQPAS AAMQTSPPNG KMKAVDDSHD VDDCYTGLGM LPDVHSYNFS  420
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-471612643106B3 domain-containing transcription factor LEC2
6j9c_D1e-471612643106B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043404.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A2K1YFW80.0A0A2K1YFW8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05380.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-42B3 family protein