PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG031922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27827.8 Da PI: 9.0507 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl CCG031922.1 14 KGAWTREEDKRLVAYIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ CCG031922.1 67 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.399 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.788 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-12 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-28 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRSPCCERA HTNKGAWTRE EDKRLVAYIQ AHGEGCWRSL PKSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRKKLLSRG 120 IDPSTHRPIN ESALDNMTTS LGAALKEEIT YGFGCKNQKN PNGEKCQELN LELRICPPYQ 180 HPPQSMESIG RKIMCFYCSL GLKNSKDCSC SNDSDDFLVM KNGTLDYRRQ ENNSKFGLFI 240 VNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043175.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-105 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A2K2AF67 | 1e-170 | A0A2K2AF67_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s11410.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-94 | myb domain protein 4 |
Publications ? help Back to Top | |||
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