PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031695.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 311aa    MW: 35076 Da    PI: 4.9497
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031695.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.97e-2291401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk. 95 
                  l pG+rF+Ptd elv++yL +kv++  + ++  ++++diy ++P ++  + ++ + ++++fF+k +k+++t++ +++ a   ++W+   +d+++ ++ 
  CCG031695.1   9 LLPGYRFSPTDRELVQFYLYPKVTNPLFITSVPVRDCDIYAHQPLQIWsAFHRLQGEDVFFFTKLKKRSPTSHVTRKiAGGPATWHREDTDRAIGVAi 106
                  579********************9998777455**************734445578899***********99999985556789**********9987 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    + +++ ++k++ + + + +  + + W+m ey+l
  CCG031695.1 107 deHCSVTTIRKSFSYQSTQ-SGQHGCGWTMYEYSL 140
                  65666799******98544.44478********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-228155IPR003441NAC domain
PROSITE profilePS5100525.7369155IPR003441NAC domain
PfamPF023651.1E-1511140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDFSLPQTLL PGYRFSPTDR ELVQFYLYPK VTNPLFITSV PVRDCDIYAH QPLQIWSAFH  60
RLQGEDVFFF TKLKKRSPTS HVTRKIAGGP ATWHREDTDR AIGVAIDEHC SVTTIRKSFS  120
YQSTQSGQHG CGWTMYEYSL PSLSQVIVLC QLRRKEDNKS HTQTTKKRRR QADDVDGATN  180
TISQKARVGE GYHQQQITCF EAPAETEYEI VYNGVTFDNL KSFSHQLVLD FDNDQVAVSS  240
VASTINVAAP TVFTSSCAEN LLPDVVVCID NDEEPSATEE DDDYHRELLR LLDFDGGSDL  300
ADGVPFIQTT S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152169RRKEDNKSHTQTTKKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2169130.0AC216913.1 Populus trichocarpa clone POP030-J10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305976.20.0NAC domain-containing protein 101
TrEMBLA0A2K2ASW30.0A0A2K2ASW3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s10720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-14NAC-domain protein 101