PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031318.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 358aa    MW: 39383.8 Da    PI: 10.2842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031318.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.2e-1556139186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v +L+ea+++++   +r+klk+++We+v+ ++      ++  ++++qCk+k+e+++kry+ +  ++        s++p++ +l+
  CCG031318.1  56 EWSEGAVSTLLEAYENKWILRNRAKLKGHDWEDVAHHVssraNCTKSPKTQTQCKNKIESMKKRYRSESSTADA------SSWPLYPRLD 139
                  5*************************************854444555566679*************99988886......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1954139No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDKETNRESP SLLPSNTTTI KEESPRKLLG GTGAAGVVVS GGGGGGGGGD RLKRDEWSEG  60
AVSTLLEAYE NKWILRNRAK LKGHDWEDVA HHVSSRANCT KSPKTQTQCK NKIESMKKRY  120
RSESSTADAS SWPLYPRLDL LLRGNSATAA VTPSPQVLPQ HQQPSVPTSA NPPLMLLMDQ  180
SPLAVTQPPA PPLAPPPPPP PQPPPLPHQT IVTAQNSHGS NGVDRGAKKD GMDTKLSDHV  240
SDKNVMDTDS STPALYSDKE KLRSKKLKKK MEKRKRRKRE EWEMADSIRW LAEVVVRSEQ  300
ARMDTMRELE KMRIEAEAKR GEMDLKRTEI IANTQLEIAK LFAGVGRGVD SSLRIGKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277KRKRRK
2272278KRKRRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020419.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A2I4KKZ20.0A0A2I4KKZ2_POPTR; Trihelix family protein
STRINGPOPTR_0003s19470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-98sequence-specific DNA binding transcription factors