PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031293.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 367aa MW: 40624.3 Da PI: 9.6321

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031293.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.7	8.4e-15	79	166	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ +++s+k qCk++++ ++k+yk +k+ ++ + s +p+fd l+ CCG031293.1 79 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVsSREDYSKSSKtdiQCKNRIDTVKKKYKLEKAKIASG--GGPSGWPFFDPLD 166 7***********************************855566655433339****************98..56667***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-25	77	168	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MEDDDEVQSH SNTTEYSSPS PPPPNGRITV SAPAAVHPQP APPPPQQNNK NRLAIVLPTK 60 PKASGGGGGG GGGGGREDCW SEGATAVLID AWGERYLELS RGNLKQKHWK EVAEIVSSRE 120 DYSKSSKTDI QCKNRIDTVK KKYKLEKAKI ASGGGPSGWP FFDPLDRLIG STARIPVVGN 180 GIVGGKIPTR VRSGSRRGGV NQYHYRNQNV KIRILKHEED EDDEEGEEEE GGAESDDSFP 240 PMKKRRVAVE REVRGKVGKE KRGGGWGNSI RMLTQAMVKF GEAYEQAESA KLQQVVEMEK 300 TRMEFVKELE LQRMQFFMQT QMGISQLKKA RRGGNATSNH YHHQYHRHHT GNNINASNNV 360 KNSDSDN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MEDDDEVQSH SNTTEYSSPS PPPPNGRITV SAPAAVHPQP APPPPQQNNK NRLAIVLPTK  60
PKASGGGGGG GGGGGREDCW SEGATAVLID AWGERYLELS RGNLKQKHWK EVAEIVSSRE  120
DYSKSSKTDI QCKNRIDTVK KKYKLEKAKI ASGGGPSGWP FFDPLDRLIG STARIPVVGN  180
GIVGGKIPTR VRSGSRRGGV NQYHYRNQNV KIRILKHEED EDDEEGEEEE GGAESDDSFP  240
PMKKRRVAVE REVRGKVGKE KRGGGWGNSI RMLTQAMVKF GEAYEQAESA KLQQVVEMEK  300
TRMEFVKELE LQRMQFFMQT QMGISQLKKA RRGGNATSNH YHHQYHRHHT GNNINASNNV  360
KNSDSDN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020370.1	0.0	PREDICTED: trihelix transcription factor ASIL2 isoform X2
Swissprot	Q9LJG8	4e-87	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2K2B9V5	1e-179	A0A2K2B9V5_POPTR; Uncharacterized protein
STRING	POPTR_0003s19840.1	1e-171	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	4e-52	sequence-specific DNA binding transcription factors