PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031056.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 627aa    MW: 69130.5 Da    PI: 6.801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031056.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07290310526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+++ + GtC++Gd C +aHg
  CCG031056.1 290 PCPDHKK-GTCRRGDLCEYAHG 310
                  7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127965.6E-1066139IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-1470150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.96370170IPR020683Ankyrin repeat-containing domain
SMARTSM002480.008770100IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.7E-1570151IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.6E-57186IPR002110Ankyrin repeat
CDDcd002045.32E-1472151No hitNo description
SMARTSM002480.0031105137IPR002110Ankyrin repeat
PROSITE profilePS5008812.182105140IPR002110Ankyrin repeat
PRINTSPR014154.6E-5124138IPR002110Ankyrin repeat
SMARTSM003560.0034285311IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5290310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906290312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4317348IPR000571Zinc finger, CCCH-type
SMARTSM0035618320343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MAPLSPMENI SFTKDMSNWI DTEDSFSSLL EFAADNNVEG FKRSVFHESE VKDVGLWYGR  60
LGASRKMVLE QRTPLMIAAR YGSVDVLKLI LSLPEVDVNF CCGPDKSTAL HCAASGGSVN  120
AINVVKLLLL SGADSNATDA NRCRPIDVVV APSKFPDLKS ALEELLNNGS VCQWDTMPVS  180
SPSLRASSPS LSSSTDEGSL SSPAGSILSP VTCKPNDVHV SSAKKEYLVD PTIPDIKNCV  240
YASDEFRMFS FKIRPCCRAY AHDWTECPFV HPGENARRRD PRKFHYSCMP CPDHKKGTCR  300
RGDLCEYAHG IFECWLHPSQ YKTRLCKEGR SCMRRVCFFA HTPDEQRPLN MSTGAAVSSS  360
KVDAMDFTAG SNLSPSSFSP TSPSTFAALK YLSSNNSHSL VPWPRQTIPN FHSSLQASCL  420
RSSLNARDIS SEDLTGLWDF GFQQRPPLNE PSPLSQPLYN GSSTNLFSSS NTLHHSNLDK  480
IFSENVSSPH HTDQLGGGAA FVFSPTYSSA ALHQLQQQQS IIYTTQGVSP CINDHVSSLG  540
FQLSAHVQRE KMLQQLQSSL LSQKLGSKAS YDLGSNGTNS RSIWESDDRN VDRFVQADEM  600
GRIHTSCSIK HDREEPDVSW VHQVLKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025532.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV41e-180C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2K1Z3610.0A0A2K1Z361_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3970622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-164CCCH-type zinc finger protein with ARM repeat domain