PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030993.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 727aa    MW: 79043.7 Da    PI: 6.6836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030993.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06318338526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C+ Gd C +aHg
  CCG030993.1 318 PCPDFRK-GACRLGDMCEYAHG 338
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.204.8E-1936186IPR020683Ankyrin repeat-containing domain
SMARTSM0024823003766IPR002110Ankyrin repeat
SuperFamilySSF484031.55E-1742177IPR020683Ankyrin repeat-containing domain
PfamPF127964.5E-1078151IPR020683Ankyrin repeat-containing domain
SMARTSM002482.6E-484114IPR002110Ankyrin repeat
CDDcd002042.76E-1584159No hitNo description
PROSITE profilePS5029716.62684192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.012119151IPR002110Ankyrin repeat
PROSITE profilePS5008810.846119154IPR002110Ankyrin repeat
SMARTSM003561.1E-5313339IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4318338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652318340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    Send to blast
MCSGPEKSAE SPSTSTPTVE NSPITKEMNC LTVETEDSFS SLLELAANND VEGFKRFIEQ  60
DASSTKEVGF WYGRQKGSKQ IVLDRRTPLM VAATYGSVDV LKFILDHTKA DVNLSCGKDK  120
TTALHCATSG GSIKVVDAVK LLLSAGADPN CLDVNGDRPG DVIVVPPNLQ SMKVTLQELL  180
SKSDSDVSVA ERDFNGSVGV CNLRVSISKS NSSSPTLSSS SENGSPLSPS VLIYSPRAAK  240
FNNLPASSTS ERKEYPIDPS LPDIKNSIYA TDEFRMFSFK VRPCSRAYSH DWTECPFVHP  300
GVNARRRDPR KFHYSCVPCP DFRKGACRLG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC  360
NRQVCFFAHT CEELRPLYVS TGSAIPSPRS SQSAASVMDM AAALSLLPGS PSSVSAMSPT  420
PFNQPMSPAN GISHSSMAWS QPNVPTLHLP GSNLQSSRLR SSLSARDIPP EDFNLLPGFD  480
SQHQILNDLT CFSESCNNSS FVVSGRSKTL TPSNLEELFA AEMSSPRYAD QAAYLNQVQQ  540
QQSMLSPVST SVFSPKNVEH PLLQAVFGVG SPGRMSSRVM EPISPMGSRL SALAQREKKQ  600
QQLRSLSSRD LASNHPMASV AGSLGNSWSK WGSPNGKVDW SVNGDELGRL RRSSSFELGN  660
NGEEPDLSWV QSLVKESPPE MLKEKFANPV SSTASPGTGL NSNSRIDSVL ESWIEQMQID  720
QQQQLVV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451490.0EF145149.1 Populus trichocarpa clone WS01121_A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025440.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_011025441.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1Z3N70.0A0A2K1Z3N7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06580.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]