PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030982.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 347aa    MW: 38363.9 Da    PI: 8.1279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030982.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.4e-08221626
                 -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                 C f+++ G+C yG+rC++ H+
  CCG030982.1  2 CTFYQK-GICVYGSRCRYDHV 21
                 999999.*************7 PP
2zf-CCCH22.32.3e-07108130326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++lC+ fa+ G C++Gd+C+ +Hg
  CCG030982.1 108 RSLCS-FAAAGSCPRGDKCPHIHG 130
                  789**.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-4120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023123IPR000571Zinc finger, CCCH-type
SMARTSM003561.6122IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075105132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023106131IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-5108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5110130IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.34E-13167238No hitNo description
Gene3DG3DSA:3.30.40.103.1E-10169233IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.14E-4173233No hitNo description
PfamPF136391.8E-7173232IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.475174232IPR001841Zinc finger, RING-type
SMARTSM001844.9E-8174231IPR001841Zinc finger, RING-type
PROSITE patternPS005180198207IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.582261290IPR000571Zinc finger, CCCH-type
SMARTSM003560.13261289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MCTFYQKGIC VYGSRCRYDH VKPSRPESTA SSSLTVLASS SVSLAFPART GSSGVRTVLA  60
VPPELSASSR PFIAPTTPAW DLESVQHDFL EDGGGEVIQP RNVKPADRSL CSFAAAGSCP  120
RGDKCPHIHG DLCAYCGKHC LHPFRPDERN EHLKACEKKQ KNLDLLKYSQ EIECSVCLDR  180
VLSKPTAAER KFGLLSECNH PFCISCIRNW RGSSPTSGMD VNSSLRACPI CRKLSYFVIP  240
SVIWYSTKEE KQEIVDTYKE KLRSIDCKHF DFGNGNCPFG TSCFYKHAYR DGRLEEVVLR  300
HLGAEDGQGV IAKNIRLSDF LGSLQISTLS RAWACVCAQT CMLALVS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084790.0AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025420.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-147C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K1Z3S00.0A0A2K1Z3S0_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-138C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]