PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030883.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 322aa    MW: 36056.6 Da    PI: 4.3871
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030883.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1994147356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  CCG030883.1  94 KKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 147
                  56689************************************************9 PP
2HD-ZIP_I/II128.33.2e-4193184192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L+++y+ lk++ ++L ke+e+L++e++
  CCG030883.1  93 EKKRRLTVDQVQFLERSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEVLQSSYNGLKADYDNLFKEKEKLKAEVN 184
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2076151IPR009057Homeodomain-like
PROSITE profilePS5007117.32989149IPR001356Homeobox domain
SMARTSM003892.8E-1992153IPR001356Homeobox domain
PfamPF000461.2E-1694147IPR001356Homeobox domain
CDDcd000867.36E-1894150No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1996156IPR009057Homeodomain-like
PRINTSPR000311.3E-5120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5129145IPR000047Helix-turn-helix motif
PfamPF021831.0E-15149190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAAFCGGGGG GGGGGANPNL SVLVQSQRGP CAASQPLEAF FLSGSSPSFL GSRSMMSFAD  60
VHHANGSTRP FFRPYDHEDN GDDDLDEYFH QPEKKRRLTV DQVQFLERSF EVENKLEPER  120
KIQLAKDLGL QPRQVAIWFQ NRRARWKTKQ LEKDYEVLQS SYNGLKADYD NLFKEKEKLK  180
AEVNLLTSEL LLKEKEKGSS ELSDKDALSQ EPPKKAIADS ASEGEVSKTS TVACQQEDIS  240
SAKSDMFDSD SPHYADGVHS SLLEAGDSSY VFEQDQSDLS QDEEDNLSKS LLPPYVFPKL  300
EDDDYSDPPA CFEDQAFWWW SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478220.0EF147822.1 Populus trichocarpa clone WS0125_E07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042611.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLB9I3080.0B9I308_POPTR; HD-ZIP family protein
STRINGPOPTR_0012s07270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-41homeobox 1