PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030734.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22863.6 Da    PI: 5.9798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030734.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151559145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kri n+  r vtfskRr gi KK +EL +L+++eva ++fs+ gk
  CCG030734.1 15 KRIVNEDDRLVTFSKRRSGIYKKLSELITLTGTEVAFLVFSPGGK 59
                 7999**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-22766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.965767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-25881IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-15929IPR002100Transcription factor, MADS-box
PfamPF003193.5E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEAKKTRGRQ KVEMKRIVNE DDRLVTFSKR RSGIYKKLSE LITLTGTEVA FLVFSPGGKP  60
FSFGHPSMEN VLDRFLENPS NTDGTHELVE EYRRARIDEL AQKYNEMQQQ LDDNKEKGSK  120
LKDKIKGNEI EDWWNAPVEE LNLQELIELE KKFEGLQMTL HSKMKDSSNV ASSSHAPEVG  180
NPSESHANDS NVASHGSNWG V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032119.11e-148PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLB9HP411e-135B9HP41_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05050.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-36AGAMOUS-like 57