PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030727.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 703aa    MW: 76002.8 Da    PI: 6.3297
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030727.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06279299526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd C +aHg
  CCG030727.1 279 PCPEFRK-GSCRQGDACEYAHG 299
                  8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.12E-1432150IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-971144IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1575155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.75975150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.637599IPR002110Ankyrin repeat
SMARTSM002480.003575105IPR002110Ankyrin repeat
CDDcd002042.35E-1477150No hitNo description
PROSITE profilePS5008811.968110145IPR002110Ankyrin repeat
SMARTSM002480.0019110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662279301IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944309333IPR000571Zinc finger, CCCH-type
SMARTSM0035631309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MCSGSKSKPT HTGFNMENEF QKQDGVCYDF SLLLELSASN DLTGFKRAIE VEGHDIDAPG  60
LWYGRRIGSK KMGFEERTPL MIAALYGSKD VLNYILETGH VDVNRGYGSD GATALHCAAA  120
GGSSSAHEVA RLLLDASADP NSVDANGNHP GDLIAPVVES GSNSTRKTLE IMLKGGSSGE  180
ESCVLAYQIV NEMDGLEQQE ISTPRVSKDG HEKREYPIDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI  300
FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSANCSTLD  360
MSSISPLSLG SPSVLIPSTS TPPTPSGSSS PIGGWTNHSN VVPPALQLPG SRLKSALCAR  420
DMELDMELLG LESHRRRQQF MDEISGLSSP SSWNNGLSTA SAFAASGDRT GELNRLGGVR  480
PTNLEDIFGS LDPSILPQMQ GLSLDAAVAQ LQPPTGMQMR QNINQQLRSS YPTSFSSSPV  540
RRSPSFGVDH SGGAAAAALS SRSAAFAKRS QSFVERSAVN RHTGFSSPSS SANVMPSNLA  600
DWGSPDGKLD WGIQGEELNK LRKSASFGFR SNGSSFATAG ASVPATVDEP DVSWVQSLVK  660
DTPAKSGPLG FEEQQQCHLN IGGSETLPAW VEQLYMEQKP LVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032108.10.0PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2K1Z2T30.0A0A2K1Z2T3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s05150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein