PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 703aa MW: 76002.8 Da PI: 6.3297 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.7 | 1.5e-06 | 279 | 299 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg CCG030727.1 279 PCPEFRK-GSCRQGDACEYAHG 299 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.12E-14 | 32 | 150 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.5E-9 | 71 | 144 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.3E-15 | 75 | 155 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.759 | 75 | 150 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.63 | 75 | 99 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0035 | 75 | 105 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 2.35E-14 | 77 | 150 | No hit | No description |
PROSITE profile | PS50088 | 11.968 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0019 | 110 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.0E-4 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.662 | 279 | 301 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.944 | 309 | 333 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 31 | 309 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MCSGSKSKPT HTGFNMENEF QKQDGVCYDF SLLLELSASN DLTGFKRAIE VEGHDIDAPG 60 LWYGRRIGSK KMGFEERTPL MIAALYGSKD VLNYILETGH VDVNRGYGSD GATALHCAAA 120 GGSSSAHEVA RLLLDASADP NSVDANGNHP GDLIAPVVES GSNSTRKTLE IMLKGGSSGE 180 ESCVLAYQIV NEMDGLEQQE ISTPRVSKDG HEKREYPIDL TLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGSCRQ GDACEYAHGI 300 FECWLHPAQY RTRLCKDETG CTRRVCFFAH KPEELRPLYA STGSAVPSPR SYSANCSTLD 360 MSSISPLSLG SPSVLIPSTS TPPTPSGSSS PIGGWTNHSN VVPPALQLPG SRLKSALCAR 420 DMELDMELLG LESHRRRQQF MDEISGLSSP SSWNNGLSTA SAFAASGDRT GELNRLGGVR 480 PTNLEDIFGS LDPSILPQMQ GLSLDAAVAQ LQPPTGMQMR QNINQQLRSS YPTSFSSSPV 540 RRSPSFGVDH SGGAAAAALS SRSAAFAKRS QSFVERSAVN RHTGFSSPSS SANVMPSNLA 600 DWGSPDGKLD WGIQGEELNK LRKSASFGFR SNGSSFATAG ASVPATVDEP DVSWVQSLVK 660 DTPAKSGPLG FEEQQQCHLN IGGSETLPAW VEQLYMEQKP LVA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011032108.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A2K1Z2T3 | 0.0 | A0A2K1Z2T3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s05150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |