PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030523.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 269aa    MW: 29141.5 Da    PI: 11.1142
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030523.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.5e-18220254234
         GATA   2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  +  nC+t +Tp+WR+gp g+k+LCnaCG++y+k++
  CCG030523.1 220 TnfNCNTRNTPMWRNGPLGPKSLCNACGIKYKKEE 254
                  5559*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-11215260No hitNo description
SMARTSM004013.7E-12215269IPR000679Zinc finger, GATA-type
PfamPF003204.4E-16219254IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-13222257IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.57E-11222268No hitNo description
PROSITE profilePS5011411.372223269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDSRRFHQAT GLKGCHHDKN DARNVVDLTL KLGFGNHAAR SHRINLIDLF NTPAPMTTPD  60
LANFNFNAGS NTSANKGINF GPTNGAQEHV VLNHLGKVNN GIACGGGGGS VAGLNANGIA  120
CGGGGGSVAA EIDFGMIVRG DHSQGGRTYK SVARGKGNQH PSNFSNTFNT FWTPSRTLNT  180
HTLSNGSSRD RQIGSSYGFR RRGPRRSRQI CYFDPHKRCT NFNCNTRNTP MWRNGPLGPK  240
SLCNACGIKY KKEEDRRKAR GATNKRNNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025401.10.0PREDICTED: uncharacterized protein LOC105126280
TrEMBLQ0ZCC41e-152Q0ZCC4_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21760.11e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.18e-13GATA transcription factor 29