PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030372.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 289aa MW: 32367.6 Da PI: 6.1758

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030372.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.5	2.2e-36	14	68	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s+ntkfCy+nnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ CCG030372.1 14 SCPRCGSSNTKFCYHNNYSLAQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 7***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-27	1	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.099	13	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-30	14	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
METGWKEHAE ISPSCPRCGS SNTKFCYHNN YSLAQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKS MRLSTDVHSK ISGYGGLSNN SIRHPFSHKG ISSMESSSSS MTPDGSHIDL 120 ALVYAKFLNP QQDSKSGFEV PEFRSEFDPY LEFPNIPSSY LESSAQLPEE NGLAGSLTIS 180 DFSTGVTLSD NDHLMYYYSL DSAQKHQDHQ DRTQQCTSDH ETSSFHLLPL PGQDTVSQEM 240 LWSNSHMMDN HSLEMSQQPV LGPDTQDPNL LFGNWSPFDM SSDDTFSRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042585.1	0.0	PREDICTED: dof zinc finger protein DOF3.5
TrEMBL	A0A3N7G2L6	0.0	A0A3N7G2L6_POPTR; Uncharacterized protein
STRING	POPTR_0006s21700.1	1e-168	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	8e-50	Dof family protein