PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030363.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 485aa    MW: 52208.1 Da    PI: 6.7982
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030363.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.6e-131151343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n+  r+ ++ kRr g+lKK +EL +LC+ e+ vii+s++
  CCG030363.1 11 IVNNAARKASLKKRRVGLLKKVSELTILCGLEAFVIIYSPD 51
                 668899*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.343149IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-18160IPR002100Transcription factor, MADS-box
CDDcd002667.89E-25285No hitNo description
PRINTSPR004043.5E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-21394IPR002100Transcription factor, MADS-box
PfamPF003191.8E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MARKKVKLMW IVNNAARKAS LKKRRVGLLK KVSELTILCG LEAFVIIYSP DDPEPAFWPS  60
RPDVQRLVTR FQNIPVVERC KKMVNQESYL KERMGKQNDQ FRKHLKENRE LEMADLMQQV  120
YQDKGFDGLD QTQLCGLAWL VAEKMKDIRK RVEYFQQIPP LQDASLPPGP FPPQYPNEDD  180
DGDGDETGGQ VVVEPGDGIR SNPADGTGVP WDQWFTDIIN NREQNVAGGS STKSDLGLPH  240
PFNIAGVGSG GGADIGFHPG HNDGGGSSTS NIFGLGLSRS RNIGDIGGGN IFHLGLLPHD  300
NDILRGQSSG GNNFDMGLPI GSNMIGCNNA GNSFNPWLPH GLGYNPGGNT SAGNNFNLGL  360
AQGNDTRSDS TGGNNHDLWL PHVKNVGGNS AAVNNVHPWL AARGDIGGAS LGPGLHPGTS  420
FSGSRTGENP FHGLHGMRHR GNVGAGDSSD GGSDLGHPGF FGTGSRDLRL PFDVTKNWLN  480
NNFNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLMWIVNNAARKASLKKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042569.10.0PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like
TrEMBLA0A2K1XBV50.0A0A2K1XBV5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-32AGAMOUS-like 80