PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030305.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 188aa MW: 21256.6 Da PI: 9.3178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030305.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F ++ L H++ H CCG030305.1 43 FQCLFCPRRFYTPQALGGHQNAH 65 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.54E-5	41	70	No hit	No description
PROSITE profile	PS50157	10.408	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MADPSLMHNF LNHQHQQHPS STSTPTKKSS TNLPIYPSSY RHFQCLFCPR RFYTPQALGG 60 HQNAHRRERA AQRRNNKTLN TPISTDPSLR KHSSFVNHNH PETTSPPAVT FLNQYHQLQA 120 LDPVMNRNYQ FPLPSSGVYV SVPQYGMLYD GSAATTSLEH DTGYRNDLSA ADDDPNVVTA 180 KIDLTLRL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216452	0.0	AC216452.1 Populus trichocarpa clone POP018-D02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010775.1	1e-138	PREDICTED: zinc finger protein KNUCKLES-like
TrEMBL	A0A2K1X413	1e-87	A0A2K1X413_POPTR; Uncharacterized protein
STRING	POPTR_0017s08950.1	1e-108	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15014	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	4e-16	C2H2 family protein