PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030296.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HRT-like

Protein Properties

Length: 491aa MW: 54601.6 Da PI: 9.4324

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030296.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.1	1.3e-17	264	294	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+i+ dG++C+r+Pv+g+KRCeeHKG+R+ CCG030296.1 264 ICGFIMVDGIPCRRPPVPGGKRCEEHKGRRV 294 8*****************************7 PP
2	HRT-like	59.7	4.6e-19	328	358	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dG++C++q+v gRKRCe HKGmR+ CCG030296.1 328 TCGVNLGDGTFCRKQAVAGRKRCEDHKGMRV 358 7*****************************7 PP
3	HRT-like	60.4	2.8e-19	371	401	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++Gs+C++qP++g+KRC++HKG+R+ CCG030296.1 371 ICGVMLGNGSFCRKQPIQGNKRCWQHKGQRV 401 8*****************************7 PP
4	HRT-like	37.1	5.4e-12	465	488	1	24
HRT-like 1 iCGviledGsvCkrqPvkgRKRCe 24 +CGv+l++Gs+C+rqP++g+KRC CCG030296.1 465 TCGVMLGNGSFCRRQPIQGNKRCC 488 7**********************5 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MDGGARLKRE DCKRTKHDSG FFKWQLLIGP SDWEDYFSGK EGASRYRIHN LPATCGPGLY 60 ELGIAVPRSG LLRRDVGKLF GDDIVVVYLG QADNVRTRLQ QYGRSGAHLG NTYSTGHVND 120 SKDDSLQKGL GLFEEIFSRG HSIVYRWAPM KDKRDAEEME GKLLATFDYA WNKGSNGTRR 180 PSDVLQKLKS RTTRPPDIFQ WLPFSSHKLG GIKIKASKPL SPEKHAGVGD EYSKKLFFGI 240 FKLSRSQPKL VTDKYGINED IDCICGFIMV DGIPCRRPPV PGGKRCEEHK GRRVYGSSYK 300 SIAQGNLHYP HGANLDSPSH NDREHETTCG VNLGDGTFCR KQAVAGRKRC EDHKGMRVNT 360 SVSDPVAEDN ICGVMLGNGS FCRKQPIQGN KRCWQHKGQR VECNLSGVDS SEPAAEDKIR 420 MSAPSSVFNS FADSVNNNAS SKHNAYSTWQ CGSSNNPVKE HFPNTCGVML GNGSFCRRQP 480 IQGNKRCCQR V

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MDGGARLKRE DCKRTKHDSG FFKWQLLIGP SDWEDYFSGK EGASRYRIHN LPATCGPGLY  60
ELGIAVPRSG LLRRDVGKLF GDDIVVVYLG QADNVRTRLQ QYGRSGAHLG NTYSTGHVND  120
SKDDSLQKGL GLFEEIFSRG HSIVYRWAPM KDKRDAEEME GKLLATFDYA WNKGSNGTRR  180
PSDVLQKLKS RTTRPPDIFQ WLPFSSHKLG GIKIKASKPL SPEKHAGVGD EYSKKLFFGI  240
FKLSRSQPKL VTDKYGINED IDCICGFIMV DGIPCRRPPV PGGKRCEEHK GRRVYGSSYK  300
SIAQGNLHYP HGANLDSPSH NDREHETTCG VNLGDGTFCR KQAVAGRKRC EDHKGMRVNT  360
SVSDPVAEDN ICGVMLGNGS FCRKQPIQGN KRCWQHKGQR VECNLSGVDS SEPAAEDKIR  420
MSAPSSVFNS FADSVNNNAS SKHNAYSTWQ CGSSNNPVKE HFPNTCGVML GNGSFCRRQP  480
IQGNKRCCQR V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460011.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A2K2A2P6	0.0	A0A2K2A2P6_POPTR; Uncharacterized protein
STRING	POPTR_0006s15450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-103	effector of transcription2