PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030129.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 601aa MW: 66010 Da PI: 8.6549

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030129.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG030129.1 116 FVCEICNKGFQRDQNLQLHRRGH 138 89*******************88 PP
2	zf-C2H2	15.3	5.6e-05	192	214	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ CCG030129.1 192 WKCDKCSKKYAVQSDWKAHQKTC 214 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.0E-5	115	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.05E-8	115	138	No hit	No description
PROSITE profile	PS50157	10.949	116	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	116	138	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	118	138	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	157	187	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.2E-5	180	213	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.05E-8	187	213	No hit	No description
SMART	SM00355	94	192	212	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MSNITGDEGS FSSGNTGEEV QQLQGKQQQQ ARNHLHGSDS VAATNSNGST SQQPVKKKRN 60 LPGTPGKSNH LTIINYSFGE KSELKLLINW SNFYESDPTA EVVALSPTTL MATNRFVCEI 120 CNKGFQRDQN LQLHRRGHNL PWKLRQRATT EVRKKVYICP EPTCVHHNPA RALGDLTGIK 180 KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR DSFITHRAFC 240 DALAEENNKV NQGVMANMGS NLQNQMPELM SSMPLSASTS TSIGIPDFNC FDPKNPLKSL 300 PQELVPNPFK SMNMAGGMFS SSSGTLFGSP RSISSTSSLQ LSSNGSSGLH YLQDNKNGCQ 360 ISATAHMSAT ALLQKAAQMG ATASNSINSP MMQKSFASSM AGPDQLSSIR STTYGGIQQH 420 NTSYDDLPPQ ASDQTSMAGM INGVGGFTNQ PLQRGPQEMS QIFDTAGTGS SAMNDMAMFA 480 SMFMSNDQNP GFIKNMEQED SGNSGLMHGR NGLMERNPTG PSRFAGTPIE GGDMMTRDFM 540 GIGGARPTNF QDQQQQHHQP RLEMEAMSQQ QRMPLMNPYH HQQQPSLREP AMEKPSSIWD 600 V

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MSNITGDEGS FSSGNTGEEV QQLQGKQQQQ ARNHLHGSDS VAATNSNGST SQQPVKKKRN  60
LPGTPGKSNH LTIINYSFGE KSELKLLINW SNFYESDPTA EVVALSPTTL MATNRFVCEI  120
CNKGFQRDQN LQLHRRGHNL PWKLRQRATT EVRKKVYICP EPTCVHHNPA RALGDLTGIK  180
KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR DSFITHRAFC  240
DALAEENNKV NQGVMANMGS NLQNQMPELM SSMPLSASTS TSIGIPDFNC FDPKNPLKSL  300
PQELVPNPFK SMNMAGGMFS SSSGTLFGSP RSISSTSSLQ LSSNGSSGLH YLQDNKNGCQ  360
ISATAHMSAT ALLQKAAQMG ATASNSINSP MMQKSFASSM AGPDQLSSIR STTYGGIQQH  420
NTSYDDLPPQ ASDQTSMAGM INGVGGFTNQ PLQRGPQEMS QIFDTAGTGS SAMNDMAMFA  480
SMFMSNDQNP GFIKNMEQED SGNSGLMHGR NGLMERNPTG PSRFAGTPIE GGDMMTRDFM  540
GIGGARPTNF QDQQQQHHQP RLEMEAMSQQ QRMPLMNPYH HQQQPSLREP AMEKPSSIWD  600
V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	188	251	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-33	188	251	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	154	KLRQRATTEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010712.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9SCQ6	1e-107	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3N7FC77	0.0	A0A3N7FC77_POPTR; Uncharacterized protein
STRING	POPTR_0002s20950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2192	30	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	6e-93	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]