PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG030015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 505aa MW: 57808.2 Da PI: 6.2638 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.7 | 1.8e-29 | 308 | 392 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r+++e ++++ k+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k ke+ ++r s++ +tc+yf+ql+ CCG030015.1 308 RWPKDEVEALIKVRSRIEIKFQEPGVKGPLWEEVSSLMSSMGYQRSAKRCKEKWENINKYFRKAKESPERR-SQRFKTCSYFNQLD 392 8********************************************************************98.67778********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.503 | 301 | 365 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-4 | 306 | 364 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.4E-20 | 307 | 394 | No hit | No description |
CDD | cd12203 | 5.40E-24 | 307 | 372 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MSFKLGRNEG SGNKKASVLN NQDEAAATPT LLDGNGHVNP PHAILMPRSW HPLEDYTTIK 60 EPFWKQLEKK RWGSEEEEIS GNRTRYFRPL EIEHVVDESR ERCRNLDIKF PIFNELEAIY 120 SLAKIAEANQ TGSGSVLTGD HSPTNAGHSV PSSAANNVTG VDHGSENSIG EEASLRKSQK 180 RKRKRKLKEK LSYMAGFFEN TVKKVMDHQE MLHRKFLEVI ERMDRERTDR EETWRHQEAE 240 KHNREAISRA HEWASTSSRE AQIVSYIERI TGQSINLPIR MAPPLLQPEI SNEPIKEITS 300 TKSDSHSRWP KDEVEALIKV RSRIEIKFQE PGVKGPLWEE VSSLMSSMGY QRSAKRCKEK 360 WENINKYFRK AKESPERRSQ RFKTCSYFNQ LDQLYSRSLI NYPSNTTYMP SRGVGFDIEK 420 QGHSEVLEAF AVGKDHLATI TNPPGENIKG AEMGSSRFEF DGIADKNEEL EEGSSEQDKE 480 VYKDDKQESG EQGKDDGSDD EENEN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 185 | KRKRKRK |
2 | 179 | 186 | KRKRKRKL |
3 | 180 | 185 | RKRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010883.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | B9HD13 | 0.0 | B9HD13_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s05520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13998 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 1e-42 | Trihelix family protein |