PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029104.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 255aa MW: 30302.2 Da PI: 6.0455

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029104.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.4	7.7e-29	2	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +p GfrF+Ptdeel+ ++L +k++g++++l ++i e+d+y+ eP+dL+ + ++ ++ e y++++r+ +y+ + + +g Wkat + k+++++ CCG029104.1 2 VPHGFRFNPTDEELI-QFLDRKASGQEMPL-HFILETDVYEREPQDLEwNqTTPLSNGERYYYCTREINYS-----REVLGRGWWKATSHVKKIHANs 92 589**********.9*********.89**********9542333366699**99985.....347889*********985 PP NAM 96 .kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 ++ lvg k+ L+f+ + ++++++kt+W+m ey+l CCG029104.1 93 dDQLLVGNKRPLTFHrfkdnERNRNNAVKTNWIMYEYSL 131 55556******7776556778889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-32	2	146	IPR003441	NAC domain
PROSITE profile	PS51005	32.596	2	146	IPR003441	NAC domain
Pfam	PF02365	1.6E-16	3	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVPHGFRFNP TDEELIQFLD RKASGQEMPL HFILETDVYE REPQDLEWNQ TTPLSNGERY 60 YYCTREINYS REVLGRGWWK ATSHVKKIHA NSDDQLLVGN KRPLTFHRFK DNERNRNNAV 120 KTNWIMYEYS LESRTTVWRL CKIKHKGKPS VQEETESMRK QYSSSNDFEA GSSTNFVSAQ 180 QQQEQTSSRP TNYEGYDHES YYQWNNTQQY LPQFPYDPYL PAPQSTSSGH YSVEQQEKLE 240 PSDEHPFPSL WSWTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	2	146	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	2	146	20	168	NAC domain-containing protein 19
3swm_B	2e-17	2	146	20	168	NAC domain-containing protein 19
3swm_C	2e-17	2	146	20	168	NAC domain-containing protein 19
3swm_D	2e-17	2	146	20	168	NAC domain-containing protein 19
3swp_A	2e-17	2	146	20	168	NAC domain-containing protein 19
3swp_B	2e-17	2	146	20	168	NAC domain-containing protein 19
3swp_C	2e-17	2	146	20	168	NAC domain-containing protein 19
3swp_D	2e-17	2	146	20	168	NAC domain-containing protein 19
4dul_A	1e-17	2	146	17	165	NAC domain-containing protein 19
4dul_B	1e-17	2	146	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU285542	1e-134	GU285542.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285543	1e-134	GU285543.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285544	1e-134	GU285544.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285545	1e-134	GU285545.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285546	1e-134	GU285546.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285547	1e-134	GU285547.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285548	1e-134	GU285548.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285549	1e-134	GU285549.1 Populus balsamifera isolate FBK13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285550	1e-134	GU285550.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285551	1e-134	GU285551.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285552	1e-134	GU285552.1 Populus balsamifera isolate GIL14 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285553	1e-134	GU285553.1 Populus balsamifera isolate GIL14 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285554	1e-134	GU285554.1 Populus balsamifera isolate NWL07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285555	1e-134	GU285555.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285556	1e-134	GU285556.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285557	1e-134	GU285557.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285558	1e-134	GU285558.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285559	1e-134	GU285559.1 Populus balsamifera isolate WHR03 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285560	1e-134	GU285560.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU285561	1e-134	GU285561.1 Populus balsamifera isolate LOV02 haplotype B no apical meristem (NAM) family protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037078.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	B9MY19	1e-171	B9MY19_POPTR; Uncharacterized protein
STRING	POPTR_0017s06000.1	1e-172	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15526	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	1e-22	NAC domain containing protein 41