PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028721.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13576.9 Da PI: 10.9774 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.5 | 3.1e-15 | 5 | 94 | 2 | 92 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+l ++d+ s+ l++p k++++ +g ++ + de g +W +++++rkk++ vl+kGW+ Fv+ ++Lk+gD + F+l++ + +++ CCG028721.1 5 SKILGNKDT--SKTLSVPTKYLKSLpsfKGR--HAVEFQAIDEGGFVWAFQCSIRKKGNPkPVLSKGWRAFVRNKKLKVGDKIKFSLNQ-TAATP 94 566644444..4559*******999966444..67899**************997777767*************************987.44445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.447 | 2 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-14 | 3 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-16 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.11E-17 | 4 | 94 | No hit | No description |
SMART | SM01019 | 7.4E-7 | 4 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-13 | 5 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MTTFSKILGN KDTSKTLSVP TKYLKSLPSF KGRHAVEFQA IDEGGFVWAF QCSIRKKGNP 60 KPVLSKGWRA FVRNKKLKVG DKIKFSLNQT AATPFYRVQA EKEVKIFGAI FGYSPIIATF 120 P |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 77 | RKKGNPKPVLSKGWRAFVRNKKLK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010225.1 | 4e-77 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | U7DW61 | 7e-72 | U7DW61_POPTR; Uncharacterized protein | ||||
TrEMBL | U7DYN2 | 5e-72 | U7DYN2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0219s00200.1 | 1e-72 | (Populus trichocarpa) | ||||
STRING | POPTR_0219s00220.1 | 9e-73 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43950.1 | 1e-08 | auxin response factor 23 |