PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028553.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 463aa    MW: 52370.9 Da    PI: 8.8176
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028553.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.3e-20109199199
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k l++s+v +  ++ lp +f+++h  ++   + t+tl+de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+++ +f  +v v+
  CCG028553.1 109 FVKSLVRSHVASCFWMGLPGQFCRAHlPHV---DATVTLQDECGKEFKMKYIAYKTG----LSAGWRQFCVAHRLFEGDVLVFQLIESCTF--KVYVI 197
                  89************************5333...569***************666665....9************************98888..88887 PP

                  -S CS
           B3  98 rk 99 
                  r+
  CCG028553.1 198 RA 199
                  75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-21102200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-25103200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-26107198No hitNo description
PROSITE profilePS5086313.028109200IPR003340B3 DNA binding domain
SMARTSM010193.8E-23109200IPR003340B3 DNA binding domain
PfamPF023628.8E-18109199IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSGRVKKEVE ETDLIKPQPF HEENRKYVED GDGKQKNPME TTAKRLKIKR RYSDSKLKFV  60
ISGHAGKCIC CRQNRAPVER SNTVGETRSS ALIRAEEVQS NLEPAFPSFV KSLVRSHVAS  120
CFWMGLPGQF CRAHLPHVDA TVTLQDECGK EFKMKYIAYK TGLSAGWRQF CVAHRLFEGD  180
VLVFQLIESC TFKVYVIRAN DLTEVDGALD NAERGNTASK SSKRKRPRSL PLAIVQKKNK  240
KSSQPRPSVL QAGQPAEQSE NDSEEVGSEV LEGFKLSLPA VQFKDIKSFE DFNILVDGLL  300
LDSELSEDIR NKYYKLCCSQ NAFLHDNLIK GVNLKLIAGI ISETVNIADA MRACTLNTSR  360
DEFATWDKAL KASELFGMNV GFLRAKLGLL LSLAFDSEGA TKTRRYIEAR FKRVRTEDEI  420
RNLEAKLVEL KDTYERYGAD IERLKSKAEG YELKFQEQVL APW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010190.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLB9HHH50.0B9HHH5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-37B3 family protein