PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028453.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 355aa    MW: 38853.6 Da    PI: 6.7087
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028453.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17259292134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  CCG028453.1 259 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 292
                  99*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.5E-765347IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.609253289IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-16253303IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15257316No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14257290IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.15E-14258305No hitNo description
PfamPF003202.5E-15259292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIGQTNTSSG FMDEIDCGSF FDHIDDLLDF PSDDVDAGLP DGTTTNNHAS CFIGNDDNSF  60
PGIWSTQSES LPGSASDLSA ELSVPYEDIV QLEWLSNFVE DSFSGGSLTM KKEESAFVDK  120
KDKKDSAPHP QFQTSSPVSV LESSSYCSGE KNAPRSPEVV ASGKCGRARS KRPRPAAFTP  180
RPAMQLVSPT SSITEVPQQF VSPRVPSDSE SFAESRLVIK IPKHVDPEHK KKKKIKFIVP  240
SGTVEMNQNS QPQQAVRKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA  300
ASPTFVPSLH SNSHKKVVEM RAKAGEKITT SRPATMMVNS PELNPNESNP AMDYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0106880.0LC010688.1 Populus nigra PniGATA8a mRNA for GATA type zinc finger domain, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041012.10.0PREDICTED: GATA transcription factor 8-like
RefseqXP_011041013.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A2I4KL320.0A0A2I4KL32_POPTR; GATA transcription factor
TrEMBLA0A2K1YYK80.0A0A2K1YYK8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-43GATA family protein