PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028453.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 355aa MW: 38853.6 Da PI: 6.7087 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55 | 1.1e-17 | 259 | 292 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + CCG028453.1 259 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 292 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 4.5E-76 | 5 | 347 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.609 | 253 | 289 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.8E-16 | 253 | 303 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 257 | 316 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 257 | 290 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.15E-14 | 258 | 305 | No hit | No description |
Pfam | PF00320 | 2.5E-15 | 259 | 292 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 259 | 284 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MIGQTNTSSG FMDEIDCGSF FDHIDDLLDF PSDDVDAGLP DGTTTNNHAS CFIGNDDNSF 60 PGIWSTQSES LPGSASDLSA ELSVPYEDIV QLEWLSNFVE DSFSGGSLTM KKEESAFVDK 120 KDKKDSAPHP QFQTSSPVSV LESSSYCSGE KNAPRSPEVV ASGKCGRARS KRPRPAAFTP 180 RPAMQLVSPT SSITEVPQQF VSPRVPSDSE SFAESRLVIK IPKHVDPEHK KKKKIKFIVP 240 SGTVEMNQNS QPQQAVRKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA 300 ASPTFVPSLH SNSHKKVVEM RAKAGEKITT SRPATMMVNS PELNPNESNP AMDYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 174 | KRPRP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC010688 | 0.0 | LC010688.1 Populus nigra PniGATA8a mRNA for GATA type zinc finger domain, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041012.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_011041013.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A2I4KL32 | 0.0 | A0A2I4KL32_POPTR; GATA transcription factor | ||||
TrEMBL | A0A2K1YYK8 | 0.0 | A0A2K1YYK8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s23010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-43 | GATA family protein |