PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 316aa MW: 35538.1 Da PI: 7.8456 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.7 | 8.8e-20 | 232 | 266 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C++tkTp+WR+gp g+ktLCnaCG++yr+ +l CCG028190.1 232 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGRL 266 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.084 | 226 | 262 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.4E-17 | 226 | 280 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-15 | 229 | 290 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 230 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.29E-15 | 231 | 278 | No hit | No description |
Pfam | PF00320 | 1.3E-17 | 232 | 266 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 232 | 257 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MSKSWFFDKD FSGVPDNFFE DTLGCFDFPL EDVEPNGDDG EDWESKFRHL EPPSSHLLTT 60 FSTALCGEDA SSLEPNYNSC SVLLDGSLQL KHWASSAEAS SSRSKPNLCR SSDSKYSHLF 120 QATSPVSVLE SSGSSCPTEN ATTCYPKFVT PVKRPRSKLT RPRRHTFPFI PTACASKKFY 180 CSASSDPELE YYNDEEILDS SRKTQKKRNL MLLSSAVEMA PKKKQPVETR RCTHCQVTKT 240 PQWREGPLGP KTLCNACGVR YRSGRLLPEY RPAASPTFVP FLHSNSHRKV LEMRKQTEQV 300 TPMATMDVLV PMAPEH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU224074 | 1e-115 | CU224074.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040891.1 | 0.0 | PREDICTED: GATA transcription factor 11-like isoform X1 | ||||
TrEMBL | A0A2K2AY20 | 0.0 | A0A2K2AY20_POPTR; GATA family protein | ||||
STRING | POPTR_0004s22140.1 | 1e-139 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 3e-48 | GATA transcription factor 11 |