PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 830aa MW: 91257.3 Da PI: 6.5702 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 28 | 85 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ CCG028185.1 28 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85 5789****************************************************97 PP | |||||||
2 | START | 64.5 | 3.2e-21 | 165 | 289 | 2 | 131 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +aee++ e+++ka+ ++ Wv+++ +++g++++ +f+ s+ sgv ++ l +e+l+d++ W ++++ e+ g g+++l +++ CCG028185.1 165 IAEETLSEFLAKATGTAVEWVQMPGMKPGPDSIGIFSISQR-------RSGVAARACS-LIAEILKDRPSWFRDCRNLEVFTMFPAGngGTIELVYSQ 254 7899********************************77655.......5555555556.7888888988*******9999999998888********* PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvd 131 +a+++l+p Rd +++Ry+ +l+ g++v++++S++ CCG028185.1 255 IYAPTTLAPaRDMWTLRYTTSLENGSLVVCERSLS 289 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 10 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.6E-15 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-16 | 25 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.68E-16 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 7.4E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 4.52E-6 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 11.029 | 155 | 289 | IPR002913 | START domain |
SMART | SM00234 | 0.001 | 164 | 336 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.14E-12 | 164 | 289 | No hit | No description |
Pfam | PF01852 | 7.6E-18 | 165 | 289 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.6E-5 | 204 | 289 | IPR023393 | START-like domain |
Pfam | PF08670 | 1.0E-44 | 677 | 829 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence Send to blast |
MAMEVAPLHR ESSSSGSMNK HLTDDGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE 60 CPILANIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL 120 VCENGFMQQQ LQTAPTANDA SCDSVVATPQ HSLRDANNPA GLLSIAEETL SEFLAKATGT 180 AVEWVQMPGM KPGPDSIGIF SISQRRSGVA ARACSLIAEI LKDRPSWFRD CRNLEVFTMF 240 PAGNGGTIEL VYSQIYAPTT LAPARDMWTL RYTTSLENGS LVVCERSLSG YGAGPNAAAA 300 AQFAWSVPEV LRPLYESSKA VAQKMTIAAL RYVRQVAHET SGEVVHGLGR QPAVLRTFNQ 360 RLSRGFNDAI NGFNDDGWSL MNADGAEDVI IAVNSTKNLI GANNSAHSLS FLGGILCAKA 420 SMLLQNVHPA VLVCFLREHH AEWADFSVDA YSAALWKAGS YAYPGMRPMR FTGSQITMPL 480 GHTIEQEEAC YLMQSFHHHA RLLLLEVIRL EGHSFAQEDA FVSQDIHLLQ ICSGIDENAV 540 GACSELVFAP IDEMFPDDAP LLPSGFRIIP LESKAKDTQE VVTTNCTLDL TSSLEAGLAI 600 NHAAVDGSSC HSLRSVLTIA FQFPFESNLQ DNVATMARQY VRSVISSVQR VAMAISPSGL 660 SPVLGPKLSA GSPEALTLAH WICQSHRQVL LKFSSCYHLG AELLRSDSVG GDSVLKHLWH 720 HPDAILCCSL KSLPVFIFAN QAGLDMLETT LVALQDITLD RIFSESGRKA LYTEFAKLMQ 780 QGFACLPAGI CMSTMGRNVS YEQAVAWKVL SAEENVVHCI AFSFVNWSFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY919617 | 0.0 | AY919617.1 Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040884.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: homeobox-leucine zipper protein REVOLUTA-like | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A2K2AY01 | 0.0 | A0A2K2AY01_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s22090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6633 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |