PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028099.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 170aa    MW: 18558.7 Da    PI: 8.2086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028099.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-182171155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++kGVr++k +g+Wv+eIr+p   gk+ r +lg++ t+e Aa a++ a  +l+g
  CCG028099.1 21 KKFKGVRRRK-WGKWVSEIRVP---GKQDRLWLGSYSTPEAAAVAYDIASYCLRG 71
                 59*****998.**********8...556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.94E-252181No hitNo description
SMARTSM003806.2E-302287IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-182282IPR016177DNA-binding domain
PROSITE profilePS5103222.3662281IPR001471AP2/ERF domain
PfamPF008473.7E-102271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-262281IPR001471AP2/ERF domain
PRINTSPR003677.3E-82334IPR001471AP2/ERF domain
PRINTSPR003677.3E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSGSSSSSRT DQERGASAAR KKFKGVRRRK WGKWVSEIRV PGKQDRLWLG SYSTPEAAAV  60
AYDIASYCLR GPSSIESLNF PLMLPASVRE DMSPKSIQKA ASDAGMAIDA QMIMNRVPEN  120
EVKFWNASGA VNRGLETDQL CETGGGDHGG NWHGNNTGMR EGDISIEDYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-151481672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559500.0EF155950.1 Populus trichocarpa RAP2-like protein (RAP2L9) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009999.11e-124PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotO805423e-41ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA9PL991e-109A9PL99_POPTR; RAP2-like protein
STRINGPOPTR_0013s10420.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.16e-44ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]