PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027994.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 466aa    MW: 52149.6 Da    PI: 5.6023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027994.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.42.4e-13129151426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e+C f+++tGtCk+G++CkF+H+
  CCG027994.1 129 EECAFYMKTGTCKFGANCKFNHP 151
                  89********************9 PP
2zf-CCCH33.66.8e-11177199527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C+++++tG CkyG  C+F+H++
  CCG027994.1 177 ECKYYLKTGGCKYGIACRFNHSR 199
                  6********************95 PP
3zf-CCCH28.82e-09226244826
                  GGGGTS--TTTTT-SS-SS CS
      zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                  +f+r+G Ck+G++Ck++H+
  CCG027994.1 226 DFMRNGSCKFGANCKYNHP 244
                  6*****************9 PP
4zf-CCCH23.68.7e-08356381227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C+f++++G Ck+ ++Ck++H++
  CCG027994.1 356 GQPQCSFYMKFGDCKFKSNCKYHHPK 381
                  7899********************96 PP
5zf-CCCH35.71.5e-11403426326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C++++r+G+Ck+G++CkF H+
  CCG027994.1 403 QNICSHYSRYGICKFGPSCKFDHS 426
                  679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.94E-7124153IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915125153IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-11129151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5131150IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648172200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5176200IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8177199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5178199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.319218246IPR000571Zinc finger, CCCH-type
SMARTSM003560.009222245IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7226244IPR000571Zinc finger, CCCH-type
SMARTSM003560.027354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173354382IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5356381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5358383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6398426IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5400427IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887400428IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9403426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-5405427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDQQIESPIP IIHKEIPQLG FQSFSSSPRL PSTPSDTDQT ALDDDNHLHQ ELQNQLDLKE  60
ESRNSNDYHE EEEEEEEFKS DKKIEFFYES IEKVGEGGDD LENKNERSND IENNNSSGHH  120
QYPVRPEAEE CAFYMKTGTC KFGANCKFNH PLRRKNQTVK EKTKEREEAT EKPSLIECKY  180
YLKTGGCKYG IACRFNHSRA KNSVPPVKIP MSPALELNFG EKEREDFMRN GSCKFGANCK  240
YNHPDPTAVG GSDHPSTFLN GGSASLPVPS SSSVGSWSSP RALNDPTSFV PIMFSPNQGV  300
PPQSPDWNGY QAPLYPPERS LHPPLSYALI NIATESNVYA PQQQQIVVDE FPERPGQPQC  360
SFYMKFGDCK FKSNCKYHHP KNRISKSPPL TLSDKGLPLR PDQNICSHYS RYGICKFGPS  420
CKFDHSIQPA SSIGSTDDQN TAFGNSVTQE AARMAESGNV SDTAVD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2231650.0CU223165.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040430.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC51e-122C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A2I4KKM10.0A0A2I4KKM1_POPTR; C3H family protein
STRINGPOPTR_0012s09400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-113C3H family protein