PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027988.4
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 289aa    MW: 32166.3 Da    PI: 8.9938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027988.4genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.8e-18431221499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    l++p kf+   ++   ++++  led+sg++W+vk+  +   +++vl++GW+ F++++gL+ gDf++F ++  s f   v++++k
  CCG027988.4  43 TVLYFPPKFTPMVSSL--NGQETFLEDSSGQRWKVKV--SILNDSFVLQEGWSAFASDHGLELGDFIIFNYIMGSHF--EVHIYDK 122
                  5588999998777433..45689**************..666666**************************977888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-2229125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.67E-2130125IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-2031121No hitNo description
SMARTSM010191.5E-932123IPR003340B3 DNA binding domain
PfamPF023622.4E-1544122IPR003340B3 DNA binding domain
PROSITE profilePS5086313.29645123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTSKVEACPM CTQNCLMTHG NRTKSRTLVS SFFKVLIGGQ FLTVLYFPPK FTPMVSSLNG  60
QETFLEDSSG QRWKVKVSIL NDSFVLQEGW SAFASDHGLE LGDFIIFNYI MGSHFEVHIY  120
DKSACERLDF SERRNQKERT GNNTQNLNTE YGQCLPKDKG SMNVNVSSTP NLAGEEICQG  180
QSKLKNDVLK AKMVAKNTST NKKETGAEKI VSKAERVEES SDMINRELGK KHEDYGETLV  240
DLSNWGLSKA NLGIEGSRKT RAGSKRLSHH AGASFRSQKE AGLGSKETR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040418.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_011040419.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_011040420.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
RefseqXP_011040421.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1
TrEMBLB9I3L40.0B9I3L4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-12B3 family protein