PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027911.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 350aa    MW: 39095 Da    PI: 9.2082
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027911.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.89.8e-41199276178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh+lsefD++krsCr+rLa+hn+rrrk+++
  CCG027911.1 199 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHNLSEFDNGKRSCRKRLADHNRRRRKSHQ 276
                  6**************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-34193261IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.983197274IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-37198275IPR004333Transcription factor, SBP-box
PfamPF031106.0E-31200273IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLEYEWGNPS AIMLSGDDEQ AASNQEVQHL NRQANIFDHY TTHSFNDNNL IPQQTSSNLM  60
FQNHPTATNS AHHSFNSLFD PRAYTGSGAP SYSANHPSLL SLDSIPTITS VTTASPYFLI  120
PKNEEISRPS DLITSRIGLN LGGRTYFSSA EDDFVKRLYR RANHIRGRTY FSSAEDDFVN  180
PPPRRSRPLD PGSSSNAVRC QAEGCNADLT HAKHYHRRHK VCEFHSKAST VIAAGLTQRF  240
CQQCSRFHNL SEFDNGKRSC RKRLADHNRR RRKSHQVNQE NQRSQLENAA NTSSEILTRS  300
PPDSGAHSTS SATTVAISPP RMSLDCFKQR AYQATAPSFT SSSSPFISRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31193273384squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017436.10.0PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLB9GPA70.0B9GPA7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-74squamosa promoter binding protein-like 8