PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027858.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32927 Da    PI: 9.4766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027858.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18129183256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq  +Lee F+++++++ +e+  LAk+l+L  rqV vWFqNrRa+ k
  CCG027858.1 129 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 183
                  788899***********************************************98 PP
2HD-ZIP_I/II122.42.2e-39129218191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL kev+eLr +l
  CCG027858.1 129 RKKLRLSKEQSSVLEENFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRFCENLTEENRRLLKEVQELR-AL 218
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.9E-341101IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466897.7E-19118186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-18123188IPR009057Homeodomain-like
PROSITE profilePS5007117.556125185IPR001356Homeobox domain
SMARTSM003891.5E-15127189IPR001356Homeobox domain
PfamPF000461.0E-15129183IPR001356Homeobox domain
CDDcd000863.71E-15129186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
SMARTSM003401.3E-24185228IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9185219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGDKNDGLGL SLSLGYATQR NHHQQPSLKL NLMPLASQNK HKKPSWTDLF QSPDRTCDTR  60
LFQRGLDMNR VPAAVADYDD ETGVSSPNST LSSFSGKRSE RKQIGEETEA ERASCSRGSD  120
DEDGGDASRK KLRLSKEQSS VLEENFKEHN TLNPKEKLAL AKQLNLRPRQ VEVWFQNRRA  180
RTKLKQTEVD CEYLKRFCEN LTEENRRLLK EVQELRALKL SPQLYMHMNP PTTLTMCPSC  240
KRVVSSASSS SAAVVSSALA PIASNPQPQR PVPINPWAAT PIHHRTFDAP ASSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133SRKKLRL
2177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017321.10.0PREDICTED: homeobox-leucine zipper protein ATHB-4-like isoform X2
SwissprotP466021e-100HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLB9GP510.0B9GP51_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-101homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]