PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027806.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 361aa    MW: 41536 Da    PI: 6.5842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027806.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.6e-18321141098
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++  + l +p kf  +h +kk+ +  ++l+ +sg +W v+l  +  ++++++++GW+eF k++ L+e+D ++Fk++++s+f   v +f+
  CCG027806.1  32 ASFGHHLPIPEKFS-NH-LKKKLPENVMLKGPSGGTWPVEL--TTDDDTMFFKNGWEEFLKDHFLEEKDLLIFKYNRESCF--EVVIFD 114
                  45556699*****7.44.45668899***************..99999****************************99***..776666 PP
2B347.53.1e-15262346187
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+ v++p +v ++  +v+p   a++h       e+k+++l+  + ++W+ k+ y+k++++  l++GW++F+ +n+L+e D+++F+ ++ 
  CCG027806.1 262 FVVVMKPTHVYRKFYMVIPSGWANRHfrT---LEKKDVILRM-KENTWNTKFLYCKSKNSGGLSSGWRNFALDNKLQEFDVCLFEPSSA 346
                  7899**********************532...3345666655.889********99999999***********************6544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-2022114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.14223116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-2124114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-1825114No hitNo description
SMARTSM010194.8E-1326116IPR003340B3 DNA binding domain
PfamPF023627.5E-1533114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-19256359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17258359IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-22262359No hitNo description
PROSITE profilePS5086311.899262361IPR003340B3 DNA binding domain
PfamPF023624.7E-14262346IPR003340B3 DNA binding domain
SMARTSM010195.8E-8262356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGEETCVDCR SKEEELYWTH FQCTHFSQIL DASFGHHLPI PEKFSNHLKK KLPENVMLKG  60
PSGGTWPVEL TTDDDTMFFK NGWEEFLKDH FLEEKDLLIF KYNRESCFEV VIFDGQSLCE  120
KAASYFVRKC GHRERDSVVH AKRKTVEDST EVSIACPQDS LGGTAEKSAN DYIYKTLVEN  180
TVISEAINKK TQREIKFSKP TQTKQSVRDE ESSSTDEATE TKPDVEHIAI NAPYVSSRRM  240
VTEEDKLNAL RLAQAAQSNE GFVVVMKPTH VYRKFYMVIP SGWANRHFRT LEKKDVILRM  300
KENTWNTKFL YCKSKNSGGL SSGWRNFALD NKLQEFDVCL FEPSSAVNNS IVFDVNIFRV  360
L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017261.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A3N7EIL20.0A0A3N7EIL2_POPTR; Uncharacterized protein
STRINGcassava4.1_010400m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-78B3 family protein