PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027701.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 364aa MW: 40292.7 Da PI: 4.4252

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027701.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	290	330	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq CCG027701.1 290 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 330 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.951	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-14	283	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-12	285	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.98E-12	289	334	No hit	No description
Pfam	PF00010	5.8E-8	290	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MNTQATEAFP DGELWNFSGM FSMEEPDSTP ELLGQCSFLQ DTDEGLHFTI PSAFFPAPES 60 EASMAEDESL FYCWHTPKPN LHFDSQESSN NSISSSSVFL PYSSHESYLF NDSNPIQATK 120 NNSMSMDISI MDEENIGLFM PLFPEIAVAE TACMNGDMSG DKKGDSDDNL KPAANDVLAK 180 GLQLKRKLDV PEPIANTLDD MKQKARVTRN VQKSRKVVQS KKNQKNAPDI SHDEEESNAG 240 PDGQSSSSCS SDEDNASQDS DSKVSGVNNS NGKTRAARGA ATDPQSLYAR KRRERINERL 300 KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPLAYN GIDNGLNQKL 360 SMFL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MNTQATEAFP DGELWNFSGM FSMEEPDSTP ELLGQCSFLQ DTDEGLHFTI PSAFFPAPES  60
EASMAEDESL FYCWHTPKPN LHFDSQESSN NSISSSSVFL PYSSHESYLF NDSNPIQATK  120
NNSMSMDISI MDEENIGLFM PLFPEIAVAE TACMNGDMSG DKKGDSDDNL KPAANDVLAK  180
GLQLKRKLDV PEPIANTLDD MKQKARVTRN VQKSRKVVQS KKNQKNAPDI SHDEEESNAG  240
PDGQSSSSCS SDEDNASQDS DSKVSGVNNS NGKTRAARGA ATDPQSLYAR KRRERINERL  300
KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPLAYN GIDNGLNQKL  360
SMFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010999863.1	0.0	PREDICTED: transcription factor bHLH85-like
TrEMBL	A0A3N7EKH3	0.0	A0A3N7EKH3_POPTR; Uncharacterized protein
TrEMBL	A0A3N7FYZ0	0.0	A0A3N7FYZ0_POPTR; Uncharacterized protein
STRING	POPTR_0002s12000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF807	33	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	6e-55	ROOT HAIR DEFECTIVE 6-LIKE 2