PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 397aa MW: 43306.1 Da PI: 5.6856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5.1e-10 | 241 | 289 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq CCG027666.1 241 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.30E-11 | 236 | 293 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-17 | 236 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.567 | 238 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-17 | 239 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-7 | 241 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 244 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MDGSGDSNDD LGYQNRGESV MNCPSSGMNT NPFYVSAWDP VVSLSQPGNF GGSSIVSQNG 60 FSNSPFPIVM ENPGISNLVR YPSGSGFVEL VPKFPGFGSG NFSEMVGSLG LTECGQIAHT 120 GCPPNYNKEA NYAQLQEDQQ LSEETSIGAS PNGKRRKRVP ESNSPLDPNK NTEGELRKDL 180 SGQSCGIAKE LDEKTQKTEQ NPGPNLRGKQ AAKQAKDDTQ SGEVPKENYF HVRARRGQAT 240 NSHSLAERVR REKISERMRM LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA 300 TVNPELQIDV ERILSKDILH SRGGNAAILG YSPGISSHPY PHRIFQPGIQ VIPNSNPQFS 360 PAPHAVLDNE LQSYFQMGFD SSSAIDNLGP NGNQQYL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017076.1 | 0.0 | PREDICTED: transcription factor bHLH74-like isoform X1 | ||||
TrEMBL | A0A2K2BHD6 | 0.0 | A0A2K2BHD6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s11540.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7585 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 2e-85 | bHLH family protein |