PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027135.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 287aa    MW: 33114.4 Da    PI: 8.0636
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027135.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.41.1e-1933120286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+qe+ +Li+a++e++ +l+rg+lk+ +Weev+  +           ++s++qC++k+e+l++ry+ +k+ +  +    +  ++yfd ++
  CCG027135.1  33 WTHQETIHLIQAYQEKWYSLKRGQLKASQWEEVAVTVaarcgyDYNHPSKSAVQCRHKMEKLRRRYRDEKRVMALG---GTCYWQYFDLMD 120
                  ***********************************998666654445589************************97...5669*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.0983295IPR017877Myb-like domain
PfamPF138375.1E-1932122No hitNo description
SMARTSM005952.9E-740127IPR006578MADF domain
PROSITE profilePS5106110.819238287IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSTPSPSPSP PPPHSPPTNP TPLSSKKTQP LPWTHQETIH LIQAYQEKWY SLKRGQLKAS  60
QWEEVAVTVA ARCGYDYNHP SKSAVQCRHK MEKLRRRYRD EKRVMALGGT CYWQYFDLMD  120
SLERGPLPIS AQPLARVPSP ENYHTRNRNN GVLGEYDDDK GEDEDDDDED YGYRSKLRSR  180
SINYILRKPS IVNRYAGGGP SGVSREAEKK RKREEVEEEE EGEEGVEMGL AGQIKAFSER  240
MVKLERKKLE VMKETERSRM EMENKKLEMI LDSQRKIVHM IGEAFGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024668.10.0PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A2K2BNT61e-157A0A2K2BNT6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s24480.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-51Trihelix family protein