PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026846.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 418aa    MW: 46419.3 Da    PI: 7.9114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026846.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11352397655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L++l+P+     +k  + +++L +A +YIk+Lq
  CCG026846.1 352 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTSDMLDLAADYIKDLQ 397
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16349410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-12350401No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14351405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEHHHHFLHG HNEHQQIHQK QTNPGLTRYQ SAPSSYLSNI LDRDFCEEFL NRPASPETER  60
ILARFLASSS GNTENISSQN LCEIKQDSPE AVPQTNQQPQ MVAAMNNLGS DTRVQKQQQQ  120
QQSNYSASQG FYQNQAKPPL PDQKSGSGMN YRSMNSVGTE RLPSMKPSSS NNSNLVRHSS  180
SPAGLFSNIN SEFEFENGYA VLRGMRDLGA GNRDINYSAA SRPTPSSGRM GPVAEMGNKN  240
MGENSPESGG YSETRSSNYV SGYPIGSWDD SAMLSAGSKR HLTDDDTTVL SGLNASETQN  300
EEGGNRPPVL VHHMSLPKTA AEISAIEKFL QFQDSVPCRT RAKRGCATHP RSIAERVRRT  360
RISERMRKLQ DLVPNMDKQT NTSDMLDLAA DYIKDLQRQV QTLSEIRARC ACINKQQP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037862.10.0PREDICTED: transcription factor bHLH122-like isoform X2
TrEMBLA0A3N7E6N30.0A0A3N7E6N3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s22290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-74bHLH family protein