PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026829.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 459aa    MW: 51444.2 Da    PI: 5.6517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026829.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix681.9e-21123219185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt++ v++Li+++  ++++   ++           +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++ t++++++ ++ dq+
  CCG026829.1 123 KWTDNVVRLLIAVVACVGDDGTLNAveglkrksgllQKKGKWKMVSKLMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGtTCTVVENPVLMDQM 219
                  7**************666555543333555666888**********************************************77*******999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-18121246No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDNSGLGGRF LSGPNSGLLD LESPIHGHQQ SQLGHPSLAH QHQVNLVGCF DNDHQPIGLT  60
EVKGTPPKVY SANFGKGKAV SPFNCASSGN ASEDDDQSFM EDGHGENSTG VKGKKGSPWQ  120
RMKWTDNVVR LLIAVVACVG DDGTLNAVEG LKRKSGLLQK KGKWKMVSKL MISKGCHVSP  180
QQCEDKFNDL NKRYKRLNEI LGRGTTCTVV ENPVLMDQMP HLSAKAKDDV RKILGSKHLF  240
YKEMCAYHNG QRIPNCQDLD LQGCSLPLER SSKDNNGSGE DEAEGNGDSD DGDGDDDESD  300
NEENNNADED GERVGQFCEG RVNDDHAHRW SQSGGRNSFD VEMAAIFQDP AVSPWERKEW  360
IKKQRLQLLE QRVSIQAQTF ELEKQRFKWL RYCSKKDKEF ERLRLENEWK RLENEQSALQ  420
LRQKQLEMDF RSSEPSFDPA CLGIDGVQGR DPIDLSRPQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164130.0AC216413.1 Populus trichocarpa clone POP035-J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037822.10.0PREDICTED: uncharacterized protein LOC105134921
RefseqXP_011037823.10.0PREDICTED: uncharacterized protein LOC105134921
RefseqXP_011037824.10.0PREDICTED: uncharacterized protein LOC105134921
TrEMBLA0A2K2BR190.0A0A2K2BR19_POPTR; Uncharacterized protein
STRINGPOPTR_0001s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-63sequence-specific DNA binding transcription factors