PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026656.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 417aa MW: 44551.2 Da PI: 7.0355

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026656.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.5	2.7e-39	92	204	5	101
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt++++a+++ ++s +ss+++ s++ CCG026656.1 92 KRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTGTIPANFStLNVSLRSSGATISAPasksaplsfhsgl 189 899***************************************************************99987777777777444434444455555555 PP TCP 89 ........kaaksaakskksq 101 + +++++ CCG026656.1 190 afydandaS------ETRRAM 204 553333220......222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-37	95	259	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.667	95	149	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MELMESQRNT RNQQRNSGAD EDRHGQKEES VAASLQLVVP LGSQSSQLQQ QHGSTSTTTT 60 TQGPFMGSIS SQIGVHPSTS TSNSTITKST IKRPSKDRHT KVDGRGRRIR MPAMCAARVF 120 QLTRELGHKS DGETIEWLLQ QAEPSIIATT GTGTIPANFS TLNVSLRSSG ATISAPASKS 180 APLSFHSGLA FYDANDASET RRAMASNPHM LGFHHQLYPQ NLVSDDNYMR KTFREDLFKE 240 TTQQQSTETI EASNSAKSRT GVQDQETAGS IRPATNILPT PMWAVAPAAT TNGGNTFWML 300 PVGGGATPAA AVTEPQMWTF PTAGAAAGVT SMQRVNFGGS SRVSNPVQLG SMIVQQQVGA 360 NQQLGLGLSE SNMGMIFGGV NAYSSSRVGL GMDLEQNNQE KQPQGSDSGD ENPNDSQ

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MELMESQRNT RNQQRNSGAD EDRHGQKEES VAASLQLVVP LGSQSSQLQQ QHGSTSTTTT  60
TQGPFMGSIS SQIGVHPSTS TSNSTITKST IKRPSKDRHT KVDGRGRRIR MPAMCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPSIIATT GTGTIPANFS TLNVSLRSSG ATISAPASKS  180
APLSFHSGLA FYDANDASET RRAMASNPHM LGFHHQLYPQ NLVSDDNYMR KTFREDLFKE  240
TTQQQSTETI EASNSAKSRT GVQDQETAGS IRPATNILPT PMWAVAPAAT TNGGNTFWML  300
PVGGGATPAA AVTEPQMWTF PTAGAAAGVT SMQRVNFGGS SRVSNPVQLG SMIVQQQVGA  360
NQQLGLGLSE SNMGMIFGGV NAYSSSRVGL GMDLEQNNQE KQPQGSDSGD ENPNDSQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215626	0.0	AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004002.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	2e-77	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A2I4KKM3	0.0	A0A2I4KKM3_POPTR; TCP family protein
STRING	POPTR_0013s11510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	4e-68	TCP family protein