PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026522.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 467aa    MW: 51251.1 Da    PI: 5.888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026522.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053583951254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  CCG026522.1 358 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 395
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.24E-5356398No hitNo description
SuperFamilySSF474596.8E-11356411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-8360401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAEEFQAGIC GENWWMNSSK SMFIGGLSPC STVSLPSDHT GTYNGSWATA DMVDLKPRSI  60
SCKESHNTTS VSDTSIAFLN SPKPQQANSD SGGSSNLIDS TLQMMGFRLS SSSSSSDWNQ  120
ALLSGNGRPE SYNSMLQEDM NSGGLNSSQI QKDWSPKSYA KTAEDFSLDQ QRLNPVNSSS  180
NSPPTCQGFS TGFSMEPTAS YGYPSTLIQS LFEPDHPQPH QVQSLFNNRP MNYLSPAAPN  240
YGTNMSELSS PSWTKVSPLI KSCLQKQQAS SLHFTNNTTY WNASPTGIND IRASFLPSSP  300
SQFLLPTFEE KPNCPGLTIE PNREEVRDSV SVVKKGCEPE FKRPRIEAPS PLPTFKVRKE  360
KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHGQAS VLSTPYMKNG NPIQHQQAPE  420
DKLNDLEGPK QDLRSRGLCL MPMSSIFPVA NETTADFWTP TFGGTFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472300.0EF147230.1 Populus trichocarpa clone WS01229_K02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009499.10.0PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBLA9PFV30.0A9PFV3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s03560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.16e-61bHLH family protein